Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00798 ATGGAACCGGCATCTGCTGTAACTCCTCCGGCTTCTAACGCTGACCATTCCTCCACCAAAGTATCTGCTGAAAATAGCAATGCACGTGATTCACCGTCCTTGTCACCAACTTCTGGTATATCTTCATGGGCAAGAAATCTGAGGCTCGGGGCAGCAGATCAGAACTCACAGACTGGGAACAGTGGCATTTCTGCATTTGTTCGCCTGGCTAGTGGGATTGGACTACGAAGTCCCTCAAATGAGACTGCTCCAGGCAACTCAGGAGCTGGGCAAACTAATTTAATTGAAACATTCACCAAAGGGTTGGTGGACTCTTCCAAGAGTGCAGTAAAGGCTATGCAGACCAAAGCACGGCATATTGTCTCTCAAAATAAACGCAGATACCAGGAAGACGGATTTGATTTGGATATGACATACATAACTGAAAATATAATATCTATGGGATTTCCTGGTGGTGATTTAAGCTCTGGAATTGTTGGGTACATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTAATCAAGTTCTTTGAAACTCATCATAAGGGAAAGTATAAAGTATACAATCTTTGTTCAGAGAGGTTGTATGATGGATCACTTTTCCAGGGGAAGGTTGCAAGTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTGCACATTCATGGTTGAAGGAGGATATCCAAAATGTGGTAGTTGTTCATTGTAAAGCTGGTCTGGGAAGGACAGGACTGATGATATGTAGTCTTCTTTTGTTTCTTAAGTTCTTCACCACTCCTGAGGAAGCCATTGATTACTTTAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAGTTCTCCCTAGTCAGATTAGATATGTCAAATACTTTGAAAGGACTTTAACACACTTCGATGGAGAAGTCCAGCCTGGACGAAGGTGCATGCTAAGAGGATTCCGGCTGCACAAATGCCCTTATTGGGTTAGGCCATCCATTACAATTTCTGATCATAGTGGAATTCTTTTCACAACGAGAAAGCATCCCAAAACAAAGGATCTAATGCCTGAAGATTTCTGGATCAATGCACCGAAGAAAGGAATTGTGGTCTTTGCATTACCAGGGGAGCCTGGTCTGGCGGAATTGGTTGGGGACTTCAAAATTCATTTTCATGACCGACAGGGAGATTTCTTCTGTTGGATGAATACAACAATGATAGAGAACAGAACAATTTTAGATGGCTCAGAACTTGATGATTTTGACAAGAGAAAGATCCCCGCTCCAGGGTTCCAGGTCGAAGTTGTGATGGTAGATTATAATGGCACCCTGCCTACTAAAGTCAATCCTGCAAGCAAAGGATCTGGCAACACAAGCAATGTCTTATCCGGTGCAAAGCCTACATCTAATTCAAGCGAGAGTAAGGTACCTAAAAATGGAGATGATGTATTCTCAGATAGTGACGAGGAGGAGACCAAGGGAACAAAAACGAGGGAAGCTGCAACTAATTACAAGTATATGGAACCACATCAAGTATCTGAGGCCACTACTGACCATGTAGGGATGTTGGCACATGCAGCGGATCGGTTGTCACTCCAGCATGAGGAACATACAGAAAACAATGCTTCTGAATCATCAACCACAGATAAACTTCATAGTACTCATGCAGACCCTAACACAACCAACATGGAATCTGTAGGGTCCAGTGAATTCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGGAGATGAAGATTTTGAGAGTGATTAA 1773 0.4258 MEPASAVTPPASNADHSSTKVSAENSNARDSPSLSPTSGISSWARNLRLGAADQNSQTGNSGISAFVRLASGIGLRSPSNETAPGNSGAGQTNLIETFTKGLVDSSKSAVKAMQTKARHIVSQNKRRYQEDGFDLDMTYITENIISMGFPGGDLSSGIVGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPPIQLIASFCQSAHSWLKEDIQNVVVVHCKAGLGRTGLMICSLLLFLKFFTTPEEAIDYFNQKRCVDGKALVLPSQIRYVKYFERTLTHFDGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHSGILFTTRKHPKTKDLMPEDFWINAPKKGIVVFALPGEPGLAELVGDFKIHFHDRQGDFFCWMNTTMIENRTILDGSELDDFDKRKIPAPGFQVEVVMVDYNGTLPTKVNPASKGSGNTSNVLSGAKPTSNSSESKVPKNGDDVFSDSDEEETKGTKTREAATNYKYMEPHQVSEATTDHVGMLAHAADRLSLQHEEHTENNASESSTTDKLHSTHADPNTTNMESVGSSEFKAIAADASVFSFGDEDFESD 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00798 590 ProSiteProfiles Phosphatase tensin-type domain profile. 126 305 IPR029023 -
Trre9g00798 590 ProSitePatterns Tyrosine specific protein phosphatases active site. 242 252 IPR016130 GO:0016311|GO:0016791
Trre9g00798 590 SMART PTEN_C2_2 310 438 IPR014020 -
Trre9g00798 590 ProSiteProfiles C2 tensin-type domain profile. 312 439 IPR014020 -
Trre9g00798 590 CDD PTP_PTEN 136 300 IPR045101 GO:0016791
Trre9g00798 590 Gene3D Protein tyrosine phosphatase superfamily 111 308 IPR029021 -
Trre9g00798 590 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 139 305 IPR029021 -
Trre9g00798 590 MobiDBLite consensus disorder prediction 10 40 - -
Trre9g00798 590 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 111 308 - -
Trre9g00798 590 MobiDBLite consensus disorder prediction 478 497 - -
Trre9g00798 590 MobiDBLite consensus disorder prediction 445 477 - -
Trre9g00798 590 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 382 436 IPR035892 -
Trre9g00798 590 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 279 IPR000387 GO:0016311|GO:0016791
Trre9g00798 590 Pfam Protein-tyrosine phosphatase 212 266 IPR000242 GO:0004725|GO:0006470
Trre9g00798 590 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 103 554 - -
Trre9g00798 590 MobiDBLite consensus disorder prediction 445 508 - -
Trre9g00798 590 MobiDBLite consensus disorder prediction 532 567 - -
Trre9g00798 590 MobiDBLite consensus disorder prediction 543 567 - -
Trre9g00798 590 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00798 Trre-Chr9 6111642 6116877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00798 3 590 Protein tyrosine phosphatase (PTP) family AT3G19420 59.706 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00798 K01110 - gmx:100801622 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00798 9 6111642 6116877 Trre9g00798 9 6111642 6116877 ECH
Trre9g00798 9 6111642 6116877 Trre1g05849 1 63186390 63191571 PCT