Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00793 ATGAACACAGCAATAACCAGAAAAGAAATGGATCGGATCAAAGGACCATGGAGTCCTGAAGAAGATGAAGCACTTCAAAAGCTTGTTGAAAAACACGGTCCGAGAAACTGGTCGATTATTAGTAAATCGATTCCAGGCAGGTCTGGGAAATCGTGTAGGCTTCGTTGGTGTAATCAGCTTTCACCACAAGTTGAACATCGGGCTTTTACACCTGAAGAAGATGATACTATAATCAGAGCCCATGCTCGATTTGGAAATAAATGGGCTACGATTGCTAGGCTTTTATCGGGCCGAACTGATAACGCTATTAAAAATCACTGGAACTCTACTTTGAAACGTAAGTGTTGTTCTAGTATGATGATTGATGAATCTCCACCGTTGAAAAGATCTGTTAGTGCTGGTGCTGCTATGCCTGTTTCTACTGGTCTTTATATTAACCCTCCTTCTTCACCTTGTTCACCCTGTTCTCCTTCTGGATCCGATGTGAGCGAGTCCAGCGCACCTATTGTGAACACTTCTCATGTTTACCGTCCGGTGCCGACGAGAACTGTTACGGTTCCTGTTACGGTTCTACCTCCTGTAGAAACGACGTCGTCTTCTAAATCTTCAAAATCTCCAAAATCAAATGATCCTCCAACATCATTATCACTCTCACTTCCCGGAGTAGAATCTTCGTCGGAAGATTCAAACCGCGTGACCGAGCCGCCTATGAAGAACTCTGCTCCAACATCTCCTCCACCATCACTGCCAAGTGCGATTCCTTTGATTCCGATAATGACTGCAGCTGTTCCTGTTTCTGTTCCGATGGCGGTTCCGATGATGCAGCAATTTAACGATCCAGCGGCGGCAACAACGGCAAGAGGATCGGCGATGCCGTTCAATTTTAGTGCGGAGTTGTTGACTGTTATGCAGGAAATGATAAGGACAGAGGTGAGGAGTTACATGGCAGGATTGGAGCAGCAAAATGGAATGTGTATTTCTGATGATGGATTTAGGAATGCTTCTGTGAAGAGAATTGGAATTAGCAGGATCGATTCGTAA 1041 0.4476 MNTAITRKEMDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCCSSMMIDESPPLKRSVSAGAAMPVSTGLYINPPSSPCSPCSPSGSDVSESSAPIVNTSHVYRPVPTRTVTVPVTVLPPVETTSSSKSSKSPKSNDPPTSLSLSLPGVESSSEDSNRVTEPPMKNSAPTSPPPSLPSAIPLIPIMTAAVPVSVPMAVPMMQQFNDPAAATTARGSAMPFNFSAELLTVMQEMIRTEVRSYMAGLEQQNGMCISDDGFRNASVKRIGISRIDS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00793 346 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Trre9g00793 346 MobiDBLite consensus disorder prediction 190 238 - -
Trre9g00793 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Trre9g00793 346 MobiDBLite consensus disorder prediction 190 248 - -
Trre9g00793 346 SMART sant 65 113 IPR001005 -
Trre9g00793 346 SMART sant 13 62 IPR001005 -
Trre9g00793 346 CDD SANT 68 111 IPR001005 -
Trre9g00793 346 Gene3D - 67 130 - -
Trre9g00793 346 FunFam Transcription factor MYB44 68 114 - -
Trre9g00793 346 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre9g00793 346 Gene3D - 13 65 - -
Trre9g00793 346 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Trre9g00793 346 Pfam Myb-like DNA-binding domain 17 74 - -
Trre9g00793 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Trre9g00793 346 FunFam MYB transcription factor 14 65 - -
Trre9g00793 346 PANTHER MYB PROTEIN-RELATED 14 210 - -
Trre9g00793 346 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00793 Trre-Chr9 6069391 6070431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00793 6 345 MYB Transcription Factor Family AT4G37260 47.838 6.19e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g00793 Myb_DNA-bind_6 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00793 K09422 - gmx:780556 393.275