Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00781 ATGTCTCATCGACAAAACCAACAACCACTGTTAGAACAATACGAAGAAGAAGAAGAAACCGCTTATGATTCATCGGAGAAGATAGTTATTGTAGGAGACGAAGAATACGAAGCTGACGTGGACGCCGGAGTACGAATTCCACCTTTTTCATGGAAAAAACTATGGTTATTCAGTGGTCCAGGTTTTCTAATGAGTATAGCTTTTCTCGATCCTGGAAACTTGGAAGGAGATCTTCAATCTGGTGCAATTGCTGGATATTCATTGTTATGGCTTCTTATGTGGGCTACAGCTATGGGACTTCTTATTCAGTTATTGTCAGCAAGGTTAGGTGTTGCTACTGGAAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGGCTAGGATTGTTCTTTGGTTGATGACTGAAGTTGCGCTTATTGGTTCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTAGAATTTTGAGTAATGGTTATGTTCCTCTTTGGGCTGGTGTTGTTATTACTGCTTTAGATTGTTTTATCTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGAAGCGTTTTTTGCTGTTCTTATTGCTATAATGGCCCTCTCCTTTGCATGGATGTTTGGTGAAGCAAAGCCTGATGGTGTTGATGTTCTTGTTGGTATTTTGGTCCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCAAGACAGGTTGACCCAAAAAAGAAAGGCCGTGTTCAAGAAGCTCTTAATTACTACTCAATAGAGTCTACCATTGCGCTTGTTGTCTCATTTGTCATTAATATATTTGTTACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCGAATAGGATCGGTCTCGTAAATGCAGGGCAGTACCTTCAAGAGAAGTATGGAGGTGGAGTATTCCCAATCCTGTATATATGGGGTATTGGGTTATTAGCAGCTGGTCAGAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGGGGTTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCATTGATTACGCGGAGCTTTGCAATCGTCCCGACTATGATAGTTGCACTTATTTTTGATACATCAGAGGATTCATTAGATGTTCTGAATGAATGGCTTAATGTTCTTCAATCAGTGCAAATACCCTTTGCACTGATTCCCTTGCTTTGTTTGGTATCGAAGGAACAAATAATGGGCACTTTCAAGATCGGCTCTGTCCTCAAGACCATTTCCTGGCTTGTGGCTGCACTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCATCTGAAGTGAGTGGAGCAGTGGTAACCGCTATTGTGTCTGCAATAACTGCTGCATACGTTGCATTCATAGTTTACCTCATTTCAAGTGCCTTCGCATTTACACCATGGCAAAGTTTTACTCGATCAAAGACAGTAGCTTCCACGGAGAGTTGA 1542 0.4034 MSHRQNQQPLLEQYEEEEETAYDSSEKIVIVGDEEYEADVDAGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGYVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEALNYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDTSEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSVLKTISWLVAALVIVINGYLLLEFFSSEVSGAVVTAIVSAITAAYVAFIVYLISSAFAFTPWQSFTRSKTVASTES 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00781 513 Hamap Divalent metal cation transporter MntH [mntH]. 40 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 47 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 Pfam Natural resistance-associated macrophage protein 75 436 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 52 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 NCBIfam Nramp family divalent metal transporter 59 428 - -
Trre9g00781 513 PRINTS Natural resistance-associated macrophage protein signature 344 363 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 PRINTS Natural resistance-associated macrophage protein signature 133 159 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 PRINTS Natural resistance-associated macrophage protein signature 237 260 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 PRINTS Natural resistance-associated macrophage protein signature 372 389 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 PRINTS Natural resistance-associated macrophage protein signature 163 182 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 PRINTS Natural resistance-associated macrophage protein signature 188 209 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 PRINTS Natural resistance-associated macrophage protein signature 406 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre9g00781 513 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00781 Trre-Chr9 5935080 5938224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00781 1 499 Inorganic Solute Cotransporters AT2G23150 80.677 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00781 K21398 - gmx:100807811 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00781 9 5935080 5938224 Trre9g00781 9 5935080 5938224 ECH
Trre9g00781 9 5935080 5938224 Trre15g03753 15 46648691 46651412 PCT