Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00767 ATGCCAAACACCACCATTCCGTCGCGCTACGTCGTCGTTTTCACGTTCCGAAGTTCCCAAAAACATGGATTCAGTACCTCTTCTGACTCAGTTTGGACAGATTATCCCATAGAGAACGCGTACGAGCTTCTAGAAGTATCGGAAACAAGCTCATTCGATGAGATCAAAGCTTCGTTTCGTAAATTGGCGAAAGAAACTCACCCTGACCTCGCTGAGTCAAGGAACGATTCCACTGCTTCACGACGATTTGTTCAAATTCTTGCTGCATATGAGATTCTTTCAGATGCTCAGAAGAGATCCCACTATGACATGTACTTGTTATATCAGAAAAAGCTTATGCAGAAGCATTCTGAGCAGGGTTCAAAATTGCGCATTTATGAATCACAGGCCACAACATTCAATGAGATGGAAGTTGTTGAATGGTTAAAGTGGTACAGATTAGCTATAAATGATATTTTGTCAGAGAAGAAAGTGGTGGTTGGAACAGGATATTTTGATGTACTCGAAAGAGATTTTTATTCTGCTATTCATGCAGCATACTATGGTCCCGAAATTGATTCTATCCCCATGGAGTTTCTTCCCGACTGTTTTGAGGCTGAGGAGAGGTCCTCTTATGAAACTCCTGAGGTTTTGCACTTGGTTTCCGGCCGTGATCTTTTTGGGATAGTTTGCTTAGTCAACAAGATTCCAGAGATATCATCTACTGAAAATGAAAAGTTAACTTCTTATAGACCCTTCCATTCAGGCCTTTGTCAATCTATAACGGATGTGGACACCTGCAGAAATGTAGAAAGGCCAGATAATTTTGTAACACAACAAAGCCGCAGCTCTAAAATTTCAAATAATGTTTCAGATGCGTATAGAGATCTAGAATTGCATGTCTCTGGAAAATTAGTTGCTACAGCATCTAGGGTCCTACCTAGATGTGGTTCTGATGCGATGCAAAAAGAAGATGCTGAAGATCACATTCATGTGTTCCTTAATTCAGATGAAGATCCCAGACATATCAGCAGTGGCTTTTCAAGAAATTTATATGTAAATAGCACAGTTGGAAGAAAAATGCATTTGGGAACCATATCTGGACTTGGGAGCAGTCCAGACGAAGGATGTTGTTATGTCTACAACAGCAGTTGTGAAAAAACCCATGTGATTATGAAACACAGAACATTGTTGGTGAAGCATATGCACTGGTATCATGTGGGTGAGAAAGTTTCAGTTTGTGAGTGTAGATGCACCAGAGCACGTTTACCACCAAGCAAATTTTGGCTATTTGAGCCTCGCTGTGGCTTCCATGACATAGGGGGTTGGTATGTGGAAACATATGGCAAAGATAAGAAGGGTCGTACTATGCCATCACAAAGGTTCTGGGATGGCTTGGATTATAGCCAGCAAACTGAAAGAAGACTCCATCCAGCAATGTATCTGTTTGCTCTTGCATATCGAACACTTGATCTTGAATATGCCAAAACAAGCAAGAAAACATTTACGGATGCCGTTGGAGCACATATGTTCCGAATTCTTCACTGGTGCAAGAAACTTGCTAAATAG 1548 0.4109 MPNTTIPSRYVVVFTFRSSQKHGFSTSSDSVWTDYPIENAYELLEVSETSSFDEIKASFRKLAKETHPDLAESRNDSTASRRFVQILAAYEILSDAQKRSHYDMYLLYQKKLMQKHSEQGSKLRIYESQATTFNEMEVVEWLKWYRLAINDILSEKKVVVGTGYFDVLERDFYSAIHAAYYGPEIDSIPMEFLPDCFEAEERSSYETPEVLHLVSGRDLFGIVCLVNKIPEISSTENEKLTSYRPFHSGLCQSITDVDTCRNVERPDNFVTQQSRSSKISNNVSDAYRDLELHVSGKLVATASRVLPRCGSDAMQKEDAEDHIHVFLNSDEDPRHISSGFSRNLYVNSTVGRKMHLGTISGLGSSPDEGCCYVYNSSCEKTHVIMKHRTLLVKHMHWYHVGEKVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKKGRTMPSQRFWDGLDYSQQTERRLHPAMYLFALAYRTLDLEYAKTSKKTFTDAVGAHMFRILHWCKKLAK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00767 515 SMART dnaj_3 38 98 IPR001623 -
Trre9g00767 515 PRINTS DnaJ domain signature 41 59 IPR001623 -
Trre9g00767 515 PRINTS DnaJ domain signature 78 98 IPR001623 -
Trre9g00767 515 PRINTS DnaJ domain signature 59 74 IPR001623 -
Trre9g00767 515 Gene3D DnaJ domain 33 127 IPR036869 -
Trre9g00767 515 ProSiteProfiles dnaJ domain profile. 39 106 IPR001623 -
Trre9g00767 515 Pfam DnaJ domain 39 103 IPR001623 -
Trre9g00767 515 ProSitePatterns Nt-dnaJ domain signature. 83 102 IPR018253 -
Trre9g00767 515 CDD DnaJ 39 95 IPR001623 -
Trre9g00767 515 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 10 513 - -
Trre9g00767 515 SUPERFAMILY Chaperone J-domain 36 109 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00767 Trre-Chr9 5810824 5814671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00767 41 105 C2H2 Transcription Factor Family AT1G74250 41.176 2.65e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00767 - - gmx:100805332 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00767 9 5810824 5814671 Trre9g00767 9 5810824 5814671 ECH