Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00756 ATGAGTTGCAACGGTTGTCGTGTCCTTAGAAAGGGTTGTAGTGAGTCATGTATCTTACGCCCTTGTATTCAATGGATTGATACCCCTGAAGCCCAAGGTCATGCCACTGTCTTTGTAGCCAAATTTTTCGGCCGTGCAGACCTTATGTCTTTCATTTCCAACGTTCCCCAACCTCAAAGACCCGCTCTGTTTCAATCTCTGTTGTTTGAAGCGTGTGGAAGAACCGTTAACCCAGTTAACGGTGCCGTTGGACTTTTATGGACAGGAAACTGGCACGTGTGCCAAGCGGCGGTTGAAACGGTGCTCCGCGGCGGAACACTGAAACCAATACCGGAGTTTCTTGGTTTAGATGCTTTTACTTCAACCGTTGATGATTCATCCGAAGGGGAAGTCACGTGTAACGACGCGCGGAGGATCCGAGATCCGAATCCGAGTTTACGGTTCATGAGTTCTGGTGGTAAACGTAAACGATCGGGTGAAGTTGCGAAGGTTCAGGCGACGACTGATCTTAATCTCCGGTTGATGCCACAAAACGCGTTGACCAACGGTTGCCGGAAGGAAATTCGCCGGTCCGGAACACCGTCGATGAATTCTGAAGAATCTGTGACGACGATGACGTGTTTGGAAAGTGGGATCGGAGATCACTACGTTCATGACGGAGACCGCAAAGTTCTCAACCTTTTTGTTTGA 690 0.4913 MSCNGCRVLRKGCSESCILRPCIQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPQPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLKPIPEFLGLDAFTSTVDDSSEGEVTCNDARRIRDPNPSLRFMSSGGKRKRSGEVAKVQATTDLNLRLMPQNALTNGCRKEIRRSGTPSMNSEESVTTMTCLESGIGDHYVHDGDRKVLNLFV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00756 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 211 - -
Trre9g00756 229 MobiDBLite consensus disorder prediction 142 161 - -
Trre9g00756 229 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Trre9g00756 229 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00756 Trre-Chr9 5710845 5711786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00756 1 229 AS2 family AT3G49940 56.471 1.67e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre9g00756 LOB 9.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00756 - - gmx:100802764 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00756 9 5710845 5711786 Trre15g03715 15 46071147 46071961 ECH
Trre9g00756 9 5710845 5711786 Trre9g00756 9 5710845 5711786 ECH
Trre9g00756 9 5710845 5711786 Trre1g05778 1 62657843 62658616 PCT
Trre15g03715 15 46071147 46071961 Trre9g00756 9 5710845 5711786 PCT