Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00752 ATGGCCATTAGGCCTTTCCAATCCACCTTCTCGCTCCATACATTCTTCTCTCTTTTCCGCACTCCCCCCAATCCATTTTCCTCCGCCGCCGCCGCCACCACCACCACCACCAACTTTCCGCAACCCTATTCCATCCTCCGTCGCTTCACCGTATCGTCTTCAACTTCATTCTCACGACCTCCTCGCCGCCCTCAACTTCCTCCTCCTCCTCCTCCGCCACCGTCTGACACTCTGGCGCACAAGATCGGAAAAGCCATTCGCCTCCCTGGCGCCGCCTCTAAGGCCAGAGTTTACGCTGATATCAATGTTGTTCGCCCTAAGGAATATTGGGACTATGAATCCCTCACCGTTCAGTGGGGGGACCAAGATGATTATCAAGTTGTGAAAAAGGTTGGAAGAGGGAAATACAGTGAAGTTTTTGAAGGTGTTCACTGTACGGATAATGAAAAATGTGTAATCAAGATCCTGAAACCTGTGAAGAAGAAGAAGATAAAGAGGGAGATCAAGATATTGCAAAATCTATGTGGAGGTCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGACCCGCAATCAAAGACCCCAAGCCTTGTATTTGAACATGTTAATAACATCGATTTTAAAGTGCTCTATCCTCACTTGTCAGATTATGATATTCGATATTATATCTATGAACTTCTAAAGGCATTAGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCACATAATGTTATGATCGACCACGGGCAGCGTAAGCTTCGCCTTATTGACTGGGGACTTGCAGAGTTTTATCATCCTGGGAAAGAATATAATGTCCGCGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTACTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGTCTCTCGGCTGTATGTTTGCTGGAATTATATTCCGGAAGGAGCCGTTCTTTTATGGACAAGATAACTATGATCAACTAGTGAAAATAGCCAAGGTACTTGGAACAGATGAATTATATGCGTATCTGAACAAGTATCGAATAGAGTTGGACCCGCAGCTCAAAGTGCTTGTTGGGAGGCATGGTCGGAAGCCATGGACAAAGTTTATTACTATGGATAACAAACACTTGGCTGTTCCTGAGGCTATTGACTTTGTTGACAAGTTACTAAAGTATGATCACGAAGAACGGCCCACTGCAAAAGAAGCTATGGCCCATCCCTACTTCAATCCAGTGAGAAGTGCAGAAAGTAGTAAAACGCGTACACATTGA 1275 0.4439 MAIRPFQSTFSLHTFFSLFRTPPNPFSSAAAATTTTTNFPQPYSILRRFTVSSSTSFSRPPRRPQLPPPPPPPPSDTLAHKIGKAIRLPGAASKARVYADINVVRPKEYWDYESLTVQWGDQDDYQVVKKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDPQSKTPSLVFEHVNNIDFKVLYPHLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHGQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGIIFRKEPFFYGQDNYDQLVKIAKVLGTDELYAYLNKYRIELDPQLKVLVGRHGRKPWTKFITMDNKHLAVPEAIDFVDKLLKYDHEERPTAKEAMAHPYFNPVRSAESSKTRTH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00752 424 ProSiteProfiles Protein kinase domain profile. 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00752 424 SMART serkin_6 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00752 424 MobiDBLite consensus disorder prediction 61 76 - -
Trre9g00752 424 CDD STKc_CK2_alpha 106 410 IPR045216 GO:0004674|GO:0006468
Trre9g00752 424 FunFam Casein kinase II subunit alpha 111 201 - -
Trre9g00752 424 FunFam Casein kinase II subunit alpha 202 413 - -
Trre9g00752 424 SUPERFAMILY Protein kinase-like (PK-like) 99 413 IPR011009 -
Trre9g00752 424 PANTHER CASEIN KINASE II SUBUNIT ALPHA 90 420 IPR045216 GO:0004674|GO:0006468
Trre9g00752 424 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Trre9g00752 424 Gene3D Phosphorylase Kinase; domain 1 111 198 - -
Trre9g00752 424 Gene3D Transferase(Phosphotransferase) domain 1 199 423 - -
Trre9g00752 424 MobiDBLite consensus disorder prediction 54 76 - -
Trre9g00752 424 Pfam Protein kinase domain 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00752 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00752 Trre-Chr9 5658867 5664375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00752 123 411 Core Cell Cycle Gene Families AT1G76540 30.225 9.81e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Trre9g00752 Pkinase 1.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00752 K03097 - cave:132186318 643.654