Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00742 ATGGGTAGTTTTGTTGACACCCCTTTTTCTTTGTCTAGTCTTCTCTGTCATGAACAAGATGAATCCACCTTCATCTTCCAAGAAGATGATGAAAATGACACTAACCCATGTTTTCTTTTGGATGATGAAGAAGAATACATTGATTATTTGTTCAAACAAGAAACAAGATTTGGATCCTTATCCTATGATGATTATGTTGATGTTGATGATGATTTTGATTCAAGTAAAAGCTTATTCTGGTTTAGAAATGCTCGTTTACATGCTATTGATTGGATTTTCAATACACAAGCAAAATTTGGATTCACATATCAAACAGCTTATTTATCAATCACTTATTTTGATCGGTTTCTTTCAAAACGATCCATTGATGAATCTAAACCATGGGCTATACAATTATTATCAGTGGCATGTTTATCAATTGCAGCAAAAATGGAAGAACAAATGGTTCCTCCATTATCAGAATATCCAATAGAGTATAGATTTGAGAACAAAGTTATCAAAAATATGGAACTTTTGATTTTGAGCACTTTGGAATGGAAAATGGGATTACCAACCCCTTTTGGTTATTTGCATTATTTTTTCACCAAGTTCTGCAATGGATCAAGATTAGAAACAATAATCTCAAAAGCCACACAACACATTGTGACATTGGTCAAAGATTTTAATTTGATGAATCAAAGACCATCTATAATTGCTTCTGCTTCTATATTAGCAGCTTATGATTCCACATTAACCAAACAAGAAATTGATCTTCGGTTAAGTGTAATCTCATCATGGGGAAATCTAGAAAGTGGACATGTATTTTCTTGTTACAATGTTATACAAGAAAATAGGACAAACAAAGTTAAGAAGACACCTTCGTCGGATTTATTATTATCAATAGAGTCAAATTCCACATGTGTTGTTGTAGAGAACAAATCTAATGGTTGTTTAGGAGTTAAGAGAAAGCTTGGTTATGAAAACATTGAAGAATGCCAAGAACAAAAGCTACAAAGACCTTAG 1002 0.3234 MGSFVDTPFSLSSLLCHEQDESTFIFQEDDENDTNPCFLLDDEEEYIDYLFKQETRFGSLSYDDYVDVDDDFDSSKSLFWFRNARLHAIDWIFNTQAKFGFTYQTAYLSITYFDRFLSKRSIDESKPWAIQLLSVACLSIAAKMEEQMVPPLSEYPIEYRFENKVIKNMELLILSTLEWKMGLPTPFGYLHYFFTKFCNGSRLETIISKATQHIVTLVKDFNLMNQRPSIIASASILAAYDSTLTKQEIDLRLSVISSWGNLESGHVFSCYNVIQENRTNKVKKTPSSDLLLSIESNSTCVVVENKSNGCLGVKRKLGYENIEECQEQKLQRP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00742 333 PANTHER CYCLINS 42 281 IPR039361 -
Trre9g00742 333 FunFam Cyclin-D5-1 80 182 - -
Trre9g00742 333 Pfam Cyclin, N-terminal domain 70 181 IPR006671 -
Trre9g00742 333 Pfam Cyclin, C-terminal domain 184 283 IPR004367 -
Trre9g00742 333 SMART cyclin_7 90 175 IPR013763 -
Trre9g00742 333 CDD CYCLIN_AtCycD-like_rpt2 185 274 - -
Trre9g00742 333 CDD CYCLIN_AtCycD-like_rpt1 84 179 - -
Trre9g00742 333 Gene3D - 83 182 - -
Trre9g00742 333 Gene3D - 183 254 - -
Trre9g00742 333 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Trre9g00742 333 SUPERFAMILY Cyclin-like 35 181 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00742 Trre-Chr9 5504907 5506333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00742 10 264 Core Cell Cycle Gene Families AT4G37630 37.591 1.11e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00742 K18811 - gmx:100798140 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00742 9 5504907 5506333 Trre9g00742 9 5504907 5506333 ECH