Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre9g00735 | ATGGGGAAGAAGCAGCATAGCAAAGACCGAATGTTCATAACCAAAACAGAATGGGCAACGGAATGGGGAGGTTTCAAATCCAAAGAAAATCGCACCGTTTTCAAACGTCTTCCTTTTTATTGCTGCGCACTTACGTTTACTCCGTTTGAGTTTCCAGTTTGTACTCCCGATGGCAGCGTTTTCGATGTTATGAACATAACTCCATATATTATAAAATATGGTAAACATCCTGTAACTGGAGCTCCCTTGAAGCAACAAGATCTCATTCCACTAAATTTTCACAAGAACTCAGAAGGAGAATATCACTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACACATTGTGGCAGTCAAGACTACTGGAAATGTCTTCTGCTATGAGGCCGTTAAAGAGTTAAACATCAAGACAAAAAACTGGAAGGAGCTCCTCACCGATGAGGCGTTTACTAAGAATGACCTTATAACAATTCAGAATCCTAATGCACTTGACCAGAAGGTGCTTCTGGATTTTGATCATGTCAAGCAAAATTTAAAAGTTGACGATGAAGAACAACAGAAAATGAATTCAGATCCAACATATAACATAAACATGTCGGGGGATATCAAGCAAATGCTTAAGGAGCTTGGAACTGAGGGAGGAAAGGAAACTGCATTGCACGGTGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCCGCTGCACTTGCTGCCATCTTAGCTGCAAGATCACAAGTTAAAGAAGATTCCAAATCGAATCCCGATGGAGCTCCTCAGGCACTCAGTATTGTAGATGCTGCCTCTGCCGCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAAGTGATAAAACTGCTGCCCGAATAGCTATGCACGTGGCTGGTGACAGGGCACCAGTGAATGCAAAGATGGTTAAAAGTCGTTACACTACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATATGACCCAGTTACAAAAAATGATTATGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTAAAACTGCATACAACACATGGTGATTTGAACATTGAGCTGCATTGTGATATAGCGCCCAGGGCATGTGAGAACTTTATCACGCTTTGTGAACGTGGATATTATAACGGAGTAGCTTTTCATAGAAGCATTAGGAATTTTATGATACAAGGTGGTGATCCTACTGGTACTGGTAGAGGTGGCGAATCAATTTGGGGAAAACCTTTTAAGGATGAACTCAACTCCAAATTAGTCCACTCTGGAAGGGGTGTAGTTAGCATGGCAAACAGTGGCCCACATACTAATGGTTCCCAGTTTTTCATCCTGTACAAATCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGTAGTAGTTGGTGGCTTGACTACACTAGCAGCAATGGAAAAGGTTCCTGTTGATGACAGTGACCGACCTCTGGAGGAAATCAAGATAACAGGGGTCACAACTTTTGTCAATCCTTACACCGAACCAGATGAGGAAGAAGAGCAAGCTAATGCCAAAGAGAAGAATGCAAATGATGAAGAAAATGACAAGGTTGGCTCATGGTATAGTAATCCTGGAGCTGGAACATCTGAATCTGGAGGTACCGGAGGTGGCGTTGGCAAATACTTGAAAGCTAAGAATGTTCCGGCTGAACCTGCTGCTGTCGACACCGCTACAGCCGTTGTAGGAAAGAAAAGAAAAGCAGTTGTCAGTGGTGAGTTTAAAGATTTTTCTGCATGGTAA | 1773 | 0.423 | MGKKQHSKDRMFITKTEWATEWGGFKSKENRTVFKRLPFYCCALTFTPFEFPVCTPDGSVFDVMNITPYIIKYGKHPVTGAPLKQQDLIPLNFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEAFTKNDLITIQNPNALDQKVLLDFDHVKQNLKVDDEEQQKMNSDPTYNINMSGDIKQMLKELGTEGGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSNPDGAPQALSIVDAASAAVHGRSAAAAKASSSDKTAARIAMHVAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNDYEYVKVEKNPKKKGYVKLHTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGVVVGGLTTLAAMEKVPVDDSDRPLEEIKITGVTTFVNPYTEPDEEEEQANAKEKNANDEENDKVGSWYSNPGAGTSESGGTGGGVGKYLKAKNVPAEPAAVDTATAVVGKKRKAVVSGEFKDFSAW | 590 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre9g00735 | 590 | FunFam | Peptidyl-prolyl cis-trans isomerase 2 | 41 | 96 | - | - | |
| Trre9g00735 | 590 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 351 | 498 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre9g00735 | 590 | SMART | Ubox_2 | 39 | 101 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre9g00735 | 590 | MobiDBLite | consensus disorder prediction | 526 | 541 | - | - | |
| Trre9g00735 | 590 | SUPERFAMILY | Cyclophilin-like | 347 | 507 | IPR029000 | - | |
| Trre9g00735 | 590 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 341 | 512 | IPR044666 | - | |
| Trre9g00735 | 590 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 361 | 376 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre9g00735 | 590 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 445 | 457 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre9g00735 | 590 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 387 | 399 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre9g00735 | 590 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 458 | 473 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre9g00735 | 590 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 430 | 445 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre9g00735 | 590 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 96 | IPR013083 | - | |
| Trre9g00735 | 590 | MobiDBLite | consensus disorder prediction | 503 | 551 | - | - | |
| Trre9g00735 | 590 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 382 | 399 | IPR020892 | GO:0003755|GO:0006457 | |
| Trre9g00735 | 590 | CDD | RING-Ubox_PPIL2 | 38 | 110 | IPR026951 | - | |
| Trre9g00735 | 590 | Pfam | U-box domain | 39 | 90 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre9g00735 | 590 | SUPERFAMILY | RING/U-box | 37 | 105 | - | - | |
| Trre9g00735 | 590 | ProSiteProfiles | U-box domain profile. | 35 | 108 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre9g00735 | 590 | Gene3D | - | 327 | 512 | IPR029000 | - | |
| Trre9g00735 | 590 | FunFam | Peptidyl-prolyl cis-trans isomerase cyp65 | 328 | 512 | - | - | |
| Trre9g00735 | 590 | CDD | cyclophilin_RING | 347 | 505 | - | - | |
| Trre9g00735 | 590 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 347 | 497 | IPR002130 | GO:0000413|GO:0003755 | |
| Trre9g00735 | 590 | MobiDBLite | consensus disorder prediction | 509 | 525 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre9g00735 | Trre-Chr9 | 5444850 | 5449727 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre9g00735 | 1 | 590 | U-box Gene Family | AT5G67530 | 76.382 | 0.0 | 904 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre9g00735 | K10598 | - | gmx:100819923 | 993.416 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre9g00735 | 9 | 5444850 | 5449727 | Trre9g00735 | 9 | 5444850 | 5449727 | ECH |