Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00734 ATGGATACATTGTTTAGACTTGTCAGTTTTCAACACCAACACCAACCTGATCATCATCATCATCAATCTTTCAATTCCACAACAAGCATAACAACAACTTCTAGTAGCTCTAAATCATCAAAACAAAACTATCACCAAAATCACTACTACGAACAACAACAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGATCTTTCCTCATCTTCTTCTAAGCACTATTATCCTTATAGTCAACCCTCCACCACAATTACTACTCACACCCCCACACCTACACCTACACCACCACCTCCTTCAACCGATTTTGCCTTCGAATTAACCGGTAAGTGGGCCCACAACATCCTCCTCGAAACAGCACATGCTATAGCTGAAAAGAATACCACTCGTTTACAACAACTTATGTGGATGCTTAATGAACTGAGCTCTGCTTACGGAGACACAGAACAAAAACTCGCGGCTTATTTTCTCCAAGCTTTATTTTCTCGAATGACCGAAGCTGGTACTCGAACCTTTCGAACACTAGCTTCGGCATCAGAGAAAACTTGCTCATTTGAATCAACAAGAAAAACGGTTTTGAAATTTCAAGAAGTTAGTCCTTGGACTACTTTTGGTCATGTCGCGTGCAATGGCGCGATTTTAGAAGCCTTAGAAGGAGATTCTAGATTGCATATAATTGATATAAGTAACACTTATTGCACTCAATGGCCTACGCTTTTTGAAGCGTTGGCTACTCGCACTGACGATACTCCTCATCTCCGGTTAACCACCGTTGTAACCGCTAGTGGCTCCGTTCAAAAAGTTATGAAAGAAATTGGTTCAAGATTGGAGAAATTTGCTAGACTTATGGGAGTTCCATTTAAATTCAATGTTATTCATCACGCCGGTGATCTTTCCGATTTAGATTTCTCCGATTTAGATATTAAAGAAGATGAAGCTTTGGCTATTAATTGTGTTAATGCTTTGCATTCAATTACTATTGGTAATAGTAATGGTAACCGGCGCGACGCATTAATAACGAAGTTAATCGCGTTGCGTCCAAGGATAGTGACGGTTGTGGAAGAGGAAGCTGATTTAGATTTTGGTTATGAAGGATATGAATTTGTGAGAGGTTTTGAAGAATGTTTAAGATGGTTTAGGGTTTATTTTGAAGCATTAGAAGAGAGTTTTACAAAGACTAGTAATGAGAGATTGATGTTGGAAAGGGAAGCCGGAAGAGAGATAGTTGATTTAGTAGCGTGTGCTCCGGCGGAGTCGATGGAACGGAGAGAAACGGCGGCGAGATGGTGTCAACGTTTGCATGGTGGAGGGTTTAATACGGTGGCGTTTAGTGAAGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAAAGAAGGGTGGTCGATGACACGGTGTAATGATGCCGGAATATTCTTAACGTGGAAGGAACAACCGGTGGTTTGGGCTAGTGCATGGAGGCCTTGA 1470 0.4088 MDTLFRLVSFQHQHQPDHHHHQSFNSTTSITTTSSSSKSSKQNYHQNHYYEQQQEECFNFFMDEEDLSSSSSKHYYPYSQPSTTITTHTPTPTPTPPPPSTDFAFELTGKWAHNILLETAHAIAEKNTTRLQQLMWMLNELSSAYGDTEQKLAAYFLQALFSRMTEAGTRTFRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEALEGDSRLHIIDISNTYCTQWPTLFEALATRTDDTPHLRLTTVVTASGSVQKVMKEIGSRLEKFARLMGVPFKFNVIHHAGDLSDLDFSDLDIKEDEALAINCVNALHSITIGNSNGNRRDALITKLIALRPRIVTVVEEEADLDFGYEGYEFVRGFEECLRWFRVYFEALEESFTKTSNERLMLEREAGREIVDLVACAPAESMERRETAARWCQRLHGGGFNTVAFSEEVCDDVRALLRRYKEGWSMTRCNDAGIFLTWKEQPVVWASAWRP 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00734 489 MobiDBLite consensus disorder prediction 22 45 - -
Trre9g00734 489 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 70 478 IPR005202 -
Trre9g00734 489 MobiDBLite consensus disorder prediction 12 45 - -
Trre9g00734 489 ProSiteProfiles GRAS family profile. 103 488 IPR005202 -
Trre9g00734 489 Pfam GRAS domain family 114 488 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00734 Trre-Chr9 5439398 5440867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00734 1 489 GRAS Transcription Factor Family AT4G37650 58.627 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre9g00734 GRAS 1.6e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00734 - - gmx:100820459 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00734 9 5439398 5440867 Trre9g00734 9 5439398 5440867 ECH
Trre9g00734 9 5439398 5440867 Trre15g03685 15 45532954 45534531 PCT