Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00728 ATGGGTGCTCCGAAGCAAAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCGGGAGTAGTCAAATACGGGGCAGGAAAATGGCGTACCATACTAACAGACCCGGATTTCAGTACCATTTTGCGTATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCGATATGGGGATCCAGGCAGAAGGCAAAGCTTGCACTTAAAAAGAACTTACCTCCCCCGAAAACTGAAAATAACCACCATACAACCTCGACTGCAATAGTTCAATATAATCCCGAAGTTGCAGCTCCTAAGCCTCCGGCAGTTTCTGGTGGAATATCAACCTCCAAAGAACAAATATCAAGATTGGACAACCTTATATTGGAGTCTATAGTCAAGTTGAAGGAGCCAAAGGGTTCTGACATGGCCGCTATTGCTGCTTATATAGAGGATCAATACCGGTCTCCACCAAACCTCATGAAGTTGCTGTCAACAAAACTGAAGCATATGGTGGCAAGTGGCAAATTAGTGAAGGTAAATCATAAGTACAGGATTGCAACAAATTCAACAAAAACATCTGAGAAAAGAAAAAGCTCTTCCCCTTTACTCCTGGAAGGGAGGCCAAAAGATTCTCCAAAAGCAGAGAAAACTGATGTCAACGTCCTTTCACAATCCCAAATTGATGTCGAGCTTTTAAAAATGAGGGGTGTGACAGCTCAAGAGGTGGCAGCAGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCTGCGGCTGAGACAGCAGCAAGGGACGCAGAGGCTGCCGAAGCTGAAGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATGAAGGCACTGAAATGTAGAAGACTTAATATTTGGTAA 885 0.4497 MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKTENNHHTTSTAIVQYNPEVAAPKPPAVSGGISTSKEQISRLDNLILESIVKLKEPKGSDMAAIAAYIEDQYRSPPNLMKLLSTKLKHMVASGKLVKVNHKYRIATNSTKTSEKRKSSSPLLLEGRPKDSPKAEKTDVNVLSQSQIDVELLKMRGVTAQEVAAAAAKAVAEAEAAIAAAETAARDAEAAEAEAEAARVFAKAAMKALKCRRLNIW 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00728 294 Pfam linker histone H1 and H5 family 122 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre9g00728 294 Coils Coil 241 275 - -
Trre9g00728 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Trre9g00728 294 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Trre9g00728 294 CDD SANT_TRF 6 57 - -
Trre9g00728 294 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre9g00728 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trre9g00728 294 Gene3D - 115 199 IPR036388 -
Trre9g00728 294 MobiDBLite consensus disorder prediction 196 214 - -
Trre9g00728 294 MobiDBLite consensus disorder prediction 185 216 - -
Trre9g00728 294 SUPERFAMILY "Winged helix" DNA-binding domain 115 195 IPR036390 -
Trre9g00728 294 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre9g00728 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre9g00728 294 Gene3D - 2 59 - -
Trre9g00728 294 SMART sant 4 59 IPR001005 -
Trre9g00728 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Trre9g00728 294 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00728 Trre-Chr9 5392142 5394334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00728 1 289 Single Myb Histone (SMH) Gene Family AT5G67580 53.041 9.55e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g00728 Linker_histone 3.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00728 K09422 - gmx:778165 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00728 9 5392142 5394334 Trre15g03678 15 45463513 45466919 PCT