Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00721 ATGCCTATGTATCAGCCATCTAAAAGGGATATGGTTGTTGGGTTTGAGGGTGGTGGGGATGGTCAGATTCTAGATCTGGACACTGCTGTTAAAGATGGTGTCTTGGGTGGTGTTGACGGTGGTGTTGTGGGAACTGGTGTTGGTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTTGATTTATGTGAAGTGCCTAGTGTTTTCATTTGTCCAATCTCTCTTGAACCAATGCAAGACCCTGTTACTCTTTGCACTGGACAAACCTATGAGAGGAACAATATTCTCAAATGGTTTAACCTAGGACACTTCACATGTCCCACAACTATGCAAGAGCTTTGGGATGATTCAATTACTCCAAACACAACGCTTTATCGGTTAATTTACACTTGGTTCTCTCAGAAGTACTTGTTGATGAAGAAGAGGTCTGAAGATGTTCAAGGAAGAGCTTCTGAACTTGTGGAGACACTCAAGAAGGTGAAAGGTCAAGCTCGTGTTCATGCTTTGAAGGAACTTCATCATGTTGTGGCTGTTCATGCCACTGCTCGTAAGTCTGTCATTGATGGAGGTGGTGTTTCTGTTTTGTCTTCTTTACTTGGTCCTTTTACTTCACATGCTGTTGGCTCTGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCCAAAAAGAATCTTATGCAACCTGCTAAGATTTCATTGATGGTTGACATCTTGAATGAGGGTTCAATTGAGACTAAAATCAATTGCACGCGGTTGATTGAATCATTAATTGAGGAGAAGGATTTTCGTTCCGAGATTATCTCCAGCCATAGTCTTTTGGTTGGATTGATGAGGCTTGTTAAGGATAAGAGACACAGCAATGGAATCTGTCCTGGATTAAGCCTTCTCAGAACAGTGTGCTTCTATAAGGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCTCAATTAGTTGAATTGTTGTCTGGTATGGAGCATGAATGTTTGGAGTTAGCCCTTTGTGTTTTGGATTCGTTGTCGTCGATACCCGAAGGCAGAGTAGCTTTGAAGGAATGTGTTAGCACCATACCAATCATGGTGAGACTTTTGATGAGGATCTCAGAAAGCTGCACTCAGTATGCATTGTCGATTTTGTGGTCTGTTTGCAAGCTTGCGCCGGAGGAGTGTTCGTCAATTGCCGTCGATGCAGGTCTTGCTGCAAAGCTCCTTCTTGTGATTCAAAGTGGTTGCAATCCAATATTGAAACAACAAGCTGCTGAGCTTTTGAAACTATGTAGTTTGAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACAAGAACAATCCAATGA 1350 0.4111 MPMYQPSKRDMVVGFEGGGDGQILDLDTAVKDGVLGGVDGGVVGTGVGEKLDLRKMIQELDLCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNLGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHHVVAVHATARKSVIDGGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLRTVCFYKEVKILLVSIGAVSQLVELLSGMEHECLELALCVLDSLSSIPEGRVALKECVSTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQAAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00721 449 SUPERFAMILY ARM repeat 235 435 IPR016024 -
Trre9g00721 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Trre9g00721 449 PANTHER WDSAM1 PROTEIN 60 435 IPR045185 GO:0061630
Trre9g00721 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Trre9g00721 449 CDD RING-Ubox_PUB 66 116 IPR045210 -
Trre9g00721 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Trre9g00721 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Trre9g00721 449 SUPERFAMILY RING/U-box 60 135 - -
Trre9g00721 449 Gene3D - 138 444 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00721 Trre-Chr9 5318815 5320164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00721 1 449 U-box Gene Family AT3G49810 74.165 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00721 - - gmx:100779827 781.171