Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00709 ATGAAGTCCTTTGAAAATATAAATCAAAATAGTAACATGTTTGGTTTCTCTGTCTCTCCTCAAATGAATATAGATGTTCCTTCCATTGCAGATGCTACTGAAACAGTTCCAACAAGCTTTTATTATCACCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAGGTGAACATGTTGGATTGTATTCACCTTTGCCTATTATGCTTGATGGATCAGTATATGGAATAGAAGCTCTTAGTAGATCAGAATCACAAGCAATGGGAATCCCTCAATATGAATGTAATACCAAAGAAGCACTACAAAACATGGATAGCATATTTTACAACCAATCTTCATGCCATAATAAACTAAACAATCCAAATAATGTAAGTGATGTACAAGAGAATACGAGTCTGTTGGAGAGTCTGAGGGAGCATCAGGAGCAACAAATCTCGTATTACACTGTCTTAGGAAATTGTAATGTGATGTTAGAAGGGTCGATGAAAAATCAACTAAAAGATAGTGTCCAACTCCCAAATATAGTTGAAGATGAAGTTTATGATCTGAAGAGATGGATCTCAAGGGATATTCATGGTACTAGCCATGCACAAGAGTTAAAATATGGGTTGTCCATGAGTCCTAGCTCACAATCAAGTTGTGTTACAAGTTCACAACAAACATCAACTATTGATTCTGTTTCCATTGATACAATGAAAAGGAAGCCTGAAATAGTGAACTTGAAAAAGAATCACAATCAAACCTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGATGGACTGGTAGATATGAAGCTCATCTATGGGATAACAGTTGTAAGAAAGAAGGACAAGCTAGGAAAGGAAAGCAAGGAGGTTATGACATAGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACACGTATAAATTTTCCATTAGAAAATTATCAAAAGGAGCTTGAAGAAATGAAGAAAATGACTAGACAAGAATATGTTGCACATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCAATGTATAGAGGAGTAACAAGCAGACATCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCACTACACAAGAAGAAGCAGGTGAAGCCTATGACATAGCTGCTATAAAATTTAGAGGAGCAAATGCTGTTACAAATTTTGATATAACAAAATATGATGTGGAAAAAATTATAGCAAGTAATAATCTTCTTAACAGTGAAGAAGCTAAGAGAAACAGAAAAATGGATGAAGTAATTAACATTGAAGAAGCCAATGCCATTAATCCAATGCAGAAGAGGTGCAAAATTCAATCATTTTCAATAGGTTTAGAAGAAATATATAATCAAGAAATAGAGGAATATTCAAATAGTGTGTTACATATATCAAATCCTTCTTCAATTGTGACAAGTTTGAGTAGCTCAAGAGAACAAAGCCCTGAAAACAGAACAAGCTTACCAATGCTTTTTGGAATGAGTTCATCAGAGTCAATGTCTTCATTTTCTTTGCCTCAAATGCCACTGTCTTTTTTTGCTGCTTGGAATGATGCAGCAGCATAG 1635 0.356 MKSFENINQNSNMFGFSVSPQMNIDVPSIADATETVPTSFYYHPTPLHNYGFYYGLEGEHVGLYSPLPIMLDGSVYGIEALSRSESQAMGIPQYECNTKEALQNMDSIFYNQSSCHNKLNNPNNVSDVQENTSLLESLREHQEQQISYYTVLGNCNVMLEGSMKNQLKDSVQLPNIVEDEVYDLKRWISRDIHGTSHAQELKYGLSMSPSSQSSCVTSSQQTSTIDSVSIDTMKRKPEIVNLKKNHNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQGGYDIEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASNNLLNSEEAKRNRKMDEVINIEEANAINPMQKRCKIQSFSIGLEEIYNQEIEEYSNSVLHISNPSSIVTSLSSSREQSPENRTSLPMLFGMSSSESMSSFSLPQMPLSFFAAWNDAAA 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00709 544 PRINTS Ethylene responsive element binding protein signature 257 268 IPR001471 GO:0003700|GO:0006355
Trre9g00709 544 PRINTS Ethylene responsive element binding protein signature 396 416 IPR001471 GO:0003700|GO:0006355
Trre9g00709 544 SUPERFAMILY DNA-binding domain 255 321 IPR016177 GO:0003677
Trre9g00709 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 215 444 - -
Trre9g00709 544 Pfam AP2 domain 256 311 IPR001471 GO:0003700|GO:0006355
Trre9g00709 544 FunFam AP2-like ethylene-responsive transcription factor ANT 255 321 - -
Trre9g00709 544 SMART rav1_2 355 420 IPR001471 GO:0003700|GO:0006355
Trre9g00709 544 SMART rav1_2 256 325 IPR001471 GO:0003700|GO:0006355
Trre9g00709 544 Gene3D AP2/ERF domain 255 321 IPR036955 GO:0003700|GO:0006355
Trre9g00709 544 Gene3D AP2/ERF domain 355 416 IPR036955 GO:0003700|GO:0006355
Trre9g00709 544 CDD AP2 354 416 IPR001471 GO:0003700|GO:0006355
Trre9g00709 544 Coils Coil 430 450 - -
Trre9g00709 544 CDD AP2 255 319 IPR001471 GO:0003700|GO:0006355
Trre9g00709 544 SUPERFAMILY DNA-binding domain 354 415 IPR016177 GO:0003677
Trre9g00709 544 FunFam AP2-like ethylene-responsive transcription factor 354 416 - -
Trre9g00709 544 ProSiteProfiles AP2/ERF domain profile. 355 414 IPR001471 GO:0003700|GO:0006355
Trre9g00709 544 ProSiteProfiles AP2/ERF domain profile. 256 319 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00709 Trre-Chr9 5218364 5221721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00709 49 542 AP2-EREBP Transcription Factor Family AT4G37750 42.361 1.48e-124 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre9g00709 AP2 1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00709 K09285 - gmx:100812275 571.237