Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00708 ATGAAGTCCTTTGAAAATATAAATCAAAATAGTAACATGTTTGGTTTCTCTGTCTCTCCTCAAATGAATATAGATGTTCCTTCCATTGCAGATGCTACTGAAACAGTTCCAACAAGCTTTTATTATCACCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAGGTGAACATGTTGGATTGTATTCACCTTTGCCTATTATGCTTGATGGATCAGTATATGGAATAGAAGCTCTTAGTAGATCAGAATCACAAGCAATGGGAATCCCTCAATATGAATGTAATACCAAAGAAGCACTACAAAACATGGATAGCATATTTTACAACCAATCTTCATGCCATAATAAACTAAACAATCCAAATAATGTAAGTGATGTACAAGAGAATACGAGTCTGTTGGAGAGTCTGAGGGAGCATCAGGAGCAACAAATCTCGTATTACACTGTCTTAGGAAATTGTAATGTGATGTTAGAAGGGTCGATGAAAAATCAACTAAAAGATAGTGTCCAACTCCCAAATATAGTTGAAGATGAAGTTTATGATCTGAAGAGATGGATCTCAAGGGATATTCATGGTACTAGCCATGCACAAGAGTTAAAATATGGGTTGTCCATGAGTCCTAGCTCACAATCAAGTTGTGTTACAAGTTCACAACAAACATCAACTATTGATTCTGTTTCCATTGATACAATGAAAAGGAAGCCTGAAATAGTGAACTTGAAAAAGAATCACAATCAAACCTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGATGGACTGGTAGATATGAAGCTCATCTATGGGATAACAGTTGTAAGAAAGAAGGACAAGCTAGGAAAGGAAAGCAAGGAGGTTATGACATAGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACACGTATAAATTTTCCATTAGAAAATTATCAAAAGGAGCTTGAAGAAATGAAGAAAATGACTAGACAAGAATATGTTGCACATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCAATGTATAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCACTACACAAGAAGAAGCAGGTGAAGCCTATGACATAGCTGCTATAAAATTTAGAGGAGCAAATGCTGTTACAAATTTTGATATAACAAAATATGATGTGGAAAAAATTATAGCAAGTAATAATCTTCTTAACAGTGAAGAAGCTAAGAGAAACAGAAAAATGGATGAAGTAATTAACATTGAAGAAGCCAATGCCATTAATCCAATGCAGAAGAGGTGCAAAATTCAATCATTTTCAATAGGTTTAGAAGAAATATATAATCAAGAAATAGAGGAATATTCAAATAGTGTGTTACATATATCAAATCCTTCTTCAATTGTGACAAGTTTGAGTAGCTCAAGAGAACAAAGCCCTGAAAACAGAACAAGCTTACCAATGCTTTTTGGAATGAGTTCATCAGAGTCAATGTCTTCATTTTCTTTGCCTCAAATGCCACTGTCTTTTTTTGCTGCTTGGAATGATGCAGCAGCATAG 1632 0.3554 MKSFENINQNSNMFGFSVSPQMNIDVPSIADATETVPTSFYYHPTPLHNYGFYYGLEGEHVGLYSPLPIMLDGSVYGIEALSRSESQAMGIPQYECNTKEALQNMDSIFYNQSSCHNKLNNPNNVSDVQENTSLLESLREHQEQQISYYTVLGNCNVMLEGSMKNQLKDSVQLPNIVEDEVYDLKRWISRDIHGTSHAQELKYGLSMSPSSQSSCVTSSQQTSTIDSVSIDTMKRKPEIVNLKKNHNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQGGYDIEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASNNLLNSEEAKRNRKMDEVINIEEANAINPMQKRCKIQSFSIGLEEIYNQEIEEYSNSVLHISNPSSIVTSLSSSREQSPENRTSLPMLFGMSSSESMSSFSLPQMPLSFFAAWNDAAA 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00708 543 ProSiteProfiles AP2/ERF domain profile. 355 413 IPR001471 GO:0003700|GO:0006355
Trre9g00708 543 SUPERFAMILY DNA-binding domain 255 321 IPR016177 GO:0003677
Trre9g00708 543 SUPERFAMILY DNA-binding domain 354 414 IPR016177 GO:0003677
Trre9g00708 543 FunFam AP2-like ethylene-responsive transcription factor 354 415 - -
Trre9g00708 543 Pfam AP2 domain 256 311 IPR001471 GO:0003700|GO:0006355
Trre9g00708 543 Pfam AP2 domain 356 405 IPR001471 GO:0003700|GO:0006355
Trre9g00708 543 FunFam AP2-like ethylene-responsive transcription factor ANT 255 321 - -
Trre9g00708 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 215 443 - -
Trre9g00708 543 CDD AP2 255 319 IPR001471 GO:0003700|GO:0006355
Trre9g00708 543 Gene3D AP2/ERF domain 255 321 IPR036955 GO:0003700|GO:0006355
Trre9g00708 543 Gene3D AP2/ERF domain 355 415 IPR036955 GO:0003700|GO:0006355
Trre9g00708 543 Coils Coil 429 449 - -
Trre9g00708 543 ProSiteProfiles AP2/ERF domain profile. 256 319 IPR001471 GO:0003700|GO:0006355
Trre9g00708 543 PRINTS Ethylene responsive element binding protein signature 257 268 IPR001471 GO:0003700|GO:0006355
Trre9g00708 543 PRINTS Ethylene responsive element binding protein signature 395 415 IPR001471 GO:0003700|GO:0006355
Trre9g00708 543 SMART rav1_2 355 419 IPR001471 GO:0003700|GO:0006355
Trre9g00708 543 SMART rav1_2 256 325 IPR001471 GO:0003700|GO:0006355
Trre9g00708 543 CDD AP2 354 415 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00708 Trre-Chr9 5218364 5221721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00708 49 541 AP2-EREBP Transcription Factor Family AT4G37750 42.435 2.57e-126 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre9g00708 AP2 9.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00708 K09285 - gmx:100812275 565.074