Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00707 ATGATGAAGTCCTTTGAAAATATAAATCAAAATAGTAACATGTTTGGTTTCTCTGTCTCTCCTCAAATGAATATAGATGTTCCTTCCATTGCAGATGCTACTGAAACAGTTCCAACAAGCTTTTATTATCACCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAGGTGAACATGTTGGATTGTATTCACCTTTGCCTATTATGCTTGATGGATCAGTATATGGAATAGAAGCTCTTAGTAGATCAGAATCACAAGCAATGGGAATCCCTCAATATGAATGTAATACCAAAGAAGCACTACAAAACATGGATAGCATATTTTACAACCAATCTTCATGCCATAATAAACTAAACAATCCAAATAATGTAAGTGATGTACAAGAGAATACGAGTCTGTTGGAGAGTCTGAGGGAGCATCAGGAGCAACAAATCTCGTATTACACTGTCTTAGGAAATTGTAATGTGATGTTAGAAGGGTCGATGAAAAATCAACTAAAAGATAGTGTCCAACTCCCAAATATAGTTGAAGATGAAGTTTATGATCTGAAGAGATGGATCTCAAGGGATATTCATGGTACTAGCCATGCACAAGAGTTAAAATATGGGTTGTCCATGAGTCCTAGCTCACAATCAAGTTGTGTTACAAGTTCACAACAAACATCAACTATTGATTCTGTTTCCATTGATACAATGAAAAGGAAGCCTGAAATAGTGAACTTGAAAAAGAATCACAATCAAACCTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGATGGACTGGTAGATATGAAGCTCATCTATGGGATAACAGTTGTAAGAAAGAAGGACAAGCTAGGAAAGGAAAGCAAGTTTATCTAGGAGGTTATGACATAGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACACGTATAAATTTTCCATTAGAAAATTATCAAAAGGAGCTTGAAGAAATGAAGAAAATGACTAGACAAGAATATGTTGCACATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCAATGTATAGAGGAGTAACAAGCAGACATCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCACTACACAAGAAGAAGCAGGTGAAGCCTATGACATAGCTGCTATAAAATTTAGAGGAGCAAATGCTGTTACAAATTTTGATATAACAAAATATGATGTGGAAAAAATTATAGCAAGTAATAATCTTCTTAACAGTGAAGAAGCTAAGAGAAACAGAAAAATGGATGAAGTAATTAACATTGAAGAAGCCAATGCCATTAATCCAATGCAGAAGAGGTGCAAAATTCAATCATTTTCAATAGGTTTAGAAGAAATATATAATCAAGAAATAGAGGAATATTCAAATAGTGTGTTACATATATCAAATCCTTCTTCAATTGTGACAAGTTTGAGTAGCTCAAGAGAACAAAGCCCTGAAAACAGAACAAGCTTACCAATGCTTTTTGGAATGAGTTCATCAGAGTCAATGTCTTCATTTTCTTTGCCTCAAATGCCACTGTCTTTTTTTGCTGCTTGGAATGATGCAGCAGCATAG 1647 0.3552 MMKSFENINQNSNMFGFSVSPQMNIDVPSIADATETVPTSFYYHPTPLHNYGFYYGLEGEHVGLYSPLPIMLDGSVYGIEALSRSESQAMGIPQYECNTKEALQNMDSIFYNQSSCHNKLNNPNNVSDVQENTSLLESLREHQEQQISYYTVLGNCNVMLEGSMKNQLKDSVQLPNIVEDEVYDLKRWISRDIHGTSHAQELKYGLSMSPSSQSSCVTSSQQTSTIDSVSIDTMKRKPEIVNLKKNHNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDIEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASNNLLNSEEAKRNRKMDEVINIEEANAINPMQKRCKIQSFSIGLEEIYNQEIEEYSNSVLHISNPSSIVTSLSSSREQSPENRTSLPMLFGMSSSESMSSFSLPQMPLSFFAAWNDAAA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00707 548 ProSiteProfiles AP2/ERF domain profile. 359 418 IPR001471 GO:0003700|GO:0006355
Trre9g00707 548 SMART rav1_2 359 424 IPR001471 GO:0003700|GO:0006355
Trre9g00707 548 SMART rav1_2 257 329 IPR001471 GO:0003700|GO:0006355
Trre9g00707 548 FunFam AP2-like ethylene-responsive transcription factor ANT 256 325 - -
Trre9g00707 548 Gene3D AP2/ERF domain 359 420 IPR036955 GO:0003700|GO:0006355
Trre9g00707 548 Gene3D AP2/ERF domain 256 325 IPR036955 GO:0003700|GO:0006355
Trre9g00707 548 Coils Coil 434 454 - -
Trre9g00707 548 Pfam AP2 domain 257 315 IPR001471 GO:0003700|GO:0006355
Trre9g00707 548 SUPERFAMILY DNA-binding domain 256 325 IPR016177 GO:0003677
Trre9g00707 548 CDD AP2 358 420 IPR001471 GO:0003700|GO:0006355
Trre9g00707 548 ProSiteProfiles AP2/ERF domain profile. 257 323 IPR001471 GO:0003700|GO:0006355
Trre9g00707 548 CDD AP2 256 323 IPR001471 GO:0003700|GO:0006355
Trre9g00707 548 SUPERFAMILY DNA-binding domain 358 419 IPR016177 GO:0003677
Trre9g00707 548 FunFam AP2-like ethylene-responsive transcription factor 358 420 - -
Trre9g00707 548 PRINTS Ethylene responsive element binding protein signature 400 420 IPR001471 GO:0003700|GO:0006355
Trre9g00707 548 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
Trre9g00707 548 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 216 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00707 Trre-Chr9 5218364 5221724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00707 50 546 AP2-EREBP Transcription Factor Family AT4G37750 42.882 2.53e-129 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre9g00707 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00707 K09285 - gmx:100812275 582.408