Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00706 ATGATGAAGTCCTTTGAAAATATAAATCAAAATAGTAACATGTTTGGTTTCTCTGTCTCTCCTCAAATGAATATAGATGTTCCTTCCATTGCAGATGCTACTGAAACAGTTCCAACAAGCTTTTATTATCACCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAGGTGAACATGTTGGATTGTATTCACCTTTGCCTATTATGCTTGATGGATCAGTATATGGAATAGAAGCTCTTAGTAGATCAGAATCACAAGCAATGGGAATCCCTCAATATGAATGTAATACCAAAGAAGCACTACAAAACATGGATAGCATATTTTACAACCAATCTTCATGCCATAATAAACTAAACAATCCAAATAATGTAAGTGATGTACAAGAGAATACGAGTCTGTTGGAGAGTCTGAGGGAGCATCAGGAGCAACAAATCTCGTATTACACTGTCTTAGGAAATTGTAATGTGATGTTAGAAGGGTCGATGAAAAATCAACTAAAAGATAGTGTCCAACTCCCAAATATAGTTGAAGATGAAGTTTATGATCTGAAGAGATGGATCTCAAGGGATATTCATGGTACTAGCCATGCACAAGAGTTAAAATATGGGTTGTCCATGAGTCCTAGCTCACAATCAAGTTGTGTTACAAGTTCACAACAAACATCAACTATTGATTCTGTTTCCATTGATACAATGAAAAGGAAGCCTGAAATAGTGAACTTGAAAAAGAATCACAATCAAACCTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGATGGACTGGTAGATATGAAGCTCATCTATGGGATAACAGTTGTAAGAAAGAAGGACAAGCTAGGAAAGGAAAGCAAGTTTATCTAGGAGGTTATGACATAGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACACGTATAAATTTTCCATTAGAAAATTATCAAAAGGAGCTTGAAGAAATGAAGAAAATGACTAGACAAGAATATGTTGCACATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCAATGTATAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCACTACACAAGAAGAAGCAGGTGAAGCCTATGACATAGCTGCTATAAAATTTAGAGGAGCAAATGCTGTTACAAATTTTGATATAACAAAATATGATGTGGAAAAAATTATAGCAAGTAATAATCTTCTTAACAGTGAAGAAGCTAAGAGAAACAGAAAAATGGATGAAGTAATTAACATTGAAGAAGCCAATGCCATTAATCCAATGCAGAAGAGGTGCAAAATTCAATCATTTTCAATAGGTTTAGAAGAAATATATAATCAAGAAATAGAGGAATATTCAAATAGTGTGTTACATATATCAAATCCTTCTTCAATTGTGACAAGTTTGAGTAGCTCAAGAGAACAAAGCCCTGAAAACAGAACAAGCTTACCAATGCTTTTTGGAATGAGTTCATCAGAGTCAATGTCTTCATTTTCTTTGCCTCAAATGCCACTGTCTTTTTTTGCTGCTTGGAATGATGCAGCAGCATAG 1644 0.3546 MMKSFENINQNSNMFGFSVSPQMNIDVPSIADATETVPTSFYYHPTPLHNYGFYYGLEGEHVGLYSPLPIMLDGSVYGIEALSRSESQAMGIPQYECNTKEALQNMDSIFYNQSSCHNKLNNPNNVSDVQENTSLLESLREHQEQQISYYTVLGNCNVMLEGSMKNQLKDSVQLPNIVEDEVYDLKRWISRDIHGTSHAQELKYGLSMSPSSQSSCVTSSQQTSTIDSVSIDTMKRKPEIVNLKKNHNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDIEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASNNLLNSEEAKRNRKMDEVINIEEANAINPMQKRCKIQSFSIGLEEIYNQEIEEYSNSVLHISNPSSIVTSLSSSREQSPENRTSLPMLFGMSSSESMSSFSLPQMPLSFFAAWNDAAA 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00706 547 FunFam AP2-like ethylene-responsive transcription factor ANT 256 325 - -
Trre9g00706 547 Pfam AP2 domain 257 315 IPR001471 GO:0003700|GO:0006355
Trre9g00706 547 Pfam AP2 domain 360 409 IPR001471 GO:0003700|GO:0006355
Trre9g00706 547 FunFam AP2-like ethylene-responsive transcription factor 358 419 - -
Trre9g00706 547 PRINTS Ethylene responsive element binding protein signature 399 419 IPR001471 GO:0003700|GO:0006355
Trre9g00706 547 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
Trre9g00706 547 SUPERFAMILY DNA-binding domain 358 418 IPR016177 GO:0003677
Trre9g00706 547 SUPERFAMILY DNA-binding domain 256 325 IPR016177 GO:0003677
Trre9g00706 547 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 216 447 - -
Trre9g00706 547 Coils Coil 433 453 - -
Trre9g00706 547 ProSiteProfiles AP2/ERF domain profile. 257 323 IPR001471 GO:0003700|GO:0006355
Trre9g00706 547 CDD AP2 256 323 IPR001471 GO:0003700|GO:0006355
Trre9g00706 547 ProSiteProfiles AP2/ERF domain profile. 359 417 IPR001471 GO:0003700|GO:0006355
Trre9g00706 547 CDD AP2 358 419 IPR001471 GO:0003700|GO:0006355
Trre9g00706 547 Gene3D AP2/ERF domain 359 419 IPR036955 GO:0003700|GO:0006355
Trre9g00706 547 Gene3D AP2/ERF domain 256 325 IPR036955 GO:0003700|GO:0006355
Trre9g00706 547 SMART rav1_2 257 329 IPR001471 GO:0003700|GO:0006355
Trre9g00706 547 SMART rav1_2 359 423 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00706 Trre-Chr9 5218364 5221724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00706 50 545 AP2-EREBP Transcription Factor Family AT4G37750 42.957 3.33e-131 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre9g00706 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00706 K09285 - gmx:100812275 576.244