Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00695 ATGGGAAGAGCTCCTTGTTGTGACAAAGCTAATGTCAAAAAAGGTCCATGGTCACCTGAAGAAGATGCAAAACTCAAGTCTTACATAGAACAAAATGGTACTGGAGGAAATTGGATTGCTCTGCCTCAAAAGATAGGACTTAAGAGATGTGGGAAAAGTTGTCGTCTTAGATGGCTAAATTATCTTCGTCCAAATATTAAACATGGCGGTTTCTCGGAGGAAGAAGATGATATTATTTGCAGTCTCTATGTTAGTATTGGAAGCAGATTTCTTAATAAGGAGTTACCTATGATGGTTATCTCGCATAGGCAGAATGTAGATGATATCTTCTTTATAGGAGAAGCGAGTGTGGAAAATCTTTAG 363 0.3802 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDDIICSLYVSIGSRFLNKELPMMVISHRQNVDDIFFIGEASVENL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00695 120 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre9g00695 120 Gene3D - 6 68 - -
Trre9g00695 120 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre9g00695 120 CDD SANT 16 62 IPR001005 -
Trre9g00695 120 FunFam Transcription factor RAX3 7 68 - -
Trre9g00695 120 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Trre9g00695 120 SUPERFAMILY Homeodomain-like 15 90 IPR009057 -
Trre9g00695 120 PANTHER OS09G0431300 PROTEIN 1 90 - -
Trre9g00695 120 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00695 Trre-Chr9 5088165 5091747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00695 1 90 MYB Transcription Factor Family AT3G49690 92.222 5.31e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre9g00695 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00695 K09422 - nnu:104589135 192.2