Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00693 ATGGGTTTTAATGATCAAAATTCCCTTCATCTTGTTCTAGGTTTATCTTTGAATTCTTTGAATACTACTTCAAAAGAAATAACCACCACAAACACCACCACGAATCCCTATTCCTCCACCGAGCCATCCTTAACGTTAGGACTCTCCCCAGAGAGTCCTAACGTTCATAGAATCAAACAAACTTCTTCACCTCATAGTTTTGTTGTTTCATCTTTCTCAAATGGGAGAGTACTACAAGTGAAGAGAGAAAGAGAGGAAGAGGAAGATCACGAGGTAGAAGAAGAAAGAGTTTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACTAATGCTAGAAAGAAACTTAGGCTTACCAAAGAACAATCTTTACTTTTGGAAGAAAGCTTCAAATTGCAAAGCACTCTTAATCCTAAAGAAAAACAAGCTTTAGCAAAGCAGTTGAATCTAAGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCAAGAACAAAGCTGAAACAAACAGAGGTTGATTGCGAGTTTTTGAAGAAATGTTGTGAAACATTAACGGACGAAAATAGGAGGCTAAAGAAAGAGTTACAAGAGTTGAAATCATTGAAGCAAGCACAACCTTTGTACATGCCTATGCCTGCAGCTACACTCTCCATATGCCCATCATGCGACCGGCTTGGCCGCGTCGCGGATGGTGGTGGTTCGAATAAGAAGATCACTGCCTTCACCATGGCTCCCAACACTCACTTCTACAATCCTTTCAACAATCCTTCAGCAGCATGTTAA 783 0.4061 MGFNDQNSLHLVLGLSLNSLNTTSKEITTTNTTTNPYSSTEPSLTLGLSPESPNVHRIKQTSSPHSFVVSSFSNGRVLQVKREREEEEDHEVEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLQSTLNPKEKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKQAQPLYMPMPAATLSICPSCDRLGRVADGGGSNKKITAFTMAPNTHFYNPFNNPSAAC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00693 260 Coils Coil 174 204 - -
Trre9g00693 260 Pfam Homeobox associated leucine zipper 168 203 IPR003106 GO:0006355|GO:0043565
Trre9g00693 260 MobiDBLite consensus disorder prediction 27 66 - -
Trre9g00693 260 Pfam Homeodomain 112 166 IPR001356 GO:0003677
Trre9g00693 260 Gene3D - 105 173 - -
Trre9g00693 260 FunFam Homeobox-leucine zipper protein 18 97 173 - -
Trre9g00693 260 MobiDBLite consensus disorder prediction 80 110 - -
Trre9g00693 260 ProSiteProfiles 'Homeobox' domain profile. 108 168 IPR001356 GO:0003677
Trre9g00693 260 CDD homeodomain 112 169 IPR001356 GO:0003677
Trre9g00693 260 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981|GO:0006355
Trre9g00693 260 SMART HOX_1 110 172 IPR001356 GO:0003677
Trre9g00693 260 SUPERFAMILY Homeodomain-like 105 169 IPR009057 -
Trre9g00693 260 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 239 - -
Trre9g00693 260 SMART halz 168 211 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00693 Trre-Chr9 5038055 5039530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00693 1 260 Homeobox Transcription Factor Family AT4G37790 56.643 1.89e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre9g00693 Homeodomain 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00693 K09338 - gmx:100795135 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00693 9 5038055 5039530 Trre15g03621 15 44492071 44493420 PCT