Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00682 ATGCAAAAAAAACTCTTCCTCATTCTTCTCTTTTTACTACTATGTTCAAATGGAAGCACTTTTTCACTCTCAAGTGATTATGAAATTCTGCTTCATGTCAAAAATACTCAAATTGATGACCAAAACAAGAGTCTCTACAATTGGCTTCCAAACACAGAACACAATCCTTGTAACTGGACCGGCATAACCTGCGATTCACGAAACAAATCGGTTATATCCATTGACCTCTCAGAAATCGGCATTTATGGCGATTTTCCCTATAATTTCTGTCGAATTCCAACTCTTCAAAACCTTTCTCTTGCTGTCAATTATCTTGGCAATGAAATTTCCTCACATTCCATCTTACCATGTTCACACCTTCGTCTCTTGAACATCTCCGAAAACTTATTCGTCGGTACCTTACCGGAATTCAACGCAGAAATCTTTCAACTAAGAGTATTCGACGCCTCACAAAACAACTTCTCTGGTGATATTCCGGCTAGTTTTGGCCGGTTACCACACCTGAAAGTACTCATTTTGTCCAATAACCTTTTCACCGGTAACATTCCGGCGAGTTTTGGCCTATTTCCGCAACTGAATGTACTTATTTTGTCCGGTAACTTATTCACCGGAACAATTCCTTCATTTTTAGGTAATCTCAGTGAATTAACTCAATTAGAACTTGCTTTTACAGAAACAATGAAACCAGGTCCTATACCTTCTCAACTAGGAAATCTTACAAAGCTAGAAATTCTCTACCTTGGTAATATCAACCTCATAGGTAACATACCAGATTCTATTGGAAACCTTATTTCCATCAAAAACTTTGATTTGTCTCAAAATTCCTTGTCTGGTAAAATCCCAGAAACCATTTCTGGTATGAAAAATGTTAAAAAAATTGAACTATATGAAAACAATCTTTCTGGTGAAATTCCACAAGGTTTAACAAATCTTACAAATTTGTTTCTATTAGACCTCTCTCAGAACGCACTCACCGGAAAATTTTCGGAAGAACTCGCTTCAATGAATCTTTCTGTTCTTCACTTGAATGACAATTTTCTCAGTGGTGAATTTCCAGAAAGTTTAGCTTTGAATCCAAATTTGCAGAATTTGAAAATTTTCAACAATAGCTTTTCGGGGAAACTACCACAAGATCTTGGAAAATATTCTGCCATTGAAGAAATCGATGTTTCAACAAATAACTTCATTGGAGAGTTACCAAAATTTATCTGTCAAAAAAAGCAGCTTCAAAGATTCCTCACATTCAATAACCGATTTTCTGGTTCTCTTCCTGATGAGTATGGTGATTGTGATTCTCTTCATTATGTAAGAATTGAGAACAATGAACTCTCTGGTCCAGTTCCAGAAAAATTCTGGAACCTGCCAAATTTTTCTTTTCTGAAAATGGATCATAACAGGTTTGAAGGTTCAGTCTCAGGTTCAATCAGAGCAAAGGGAATGATCAAACTAGTTTTAGCCGGTAATAAGTTTTCCGGTGAGTTTCCGGTAGGTGTCTGTGAACTTGTTGAGCTCGTGCAAATTGACATTGGAAACAACAGGTTTACCGGTGAAGTTCCTACCTGCATAACCGGTTTGAAAAAGTTACAGAAACTGAATATGCAGGGGAACATGTTCACCGGTAAAATTCCTAGTAATGTATCTTCATGGACTCAATTAACCGAGTTAAACCTATCGAATAACCGGTTCACTGGTTCAATTCCACCGGAACTTGGTAATTTGCCTGGTTTAATATACCTTGATCTCTCCGTTAATTCTTTAACGGGGAAGATTCCGATGGAGTTAACAAGCTTAAGGTTGAATCAGTTCAATGTTTCTAATAACAAATTGTCCGGTGAGGTTCCTTCGGATTTTAACAGCGAAGTTTACTTATCGGGTCTAATAGGTAACCCGGGTTTGTGTAGCAATGTTATGAAAAACTTTCATCCTTGTTCAAAACATAGACCCTTTTCAGTTGTTGCAATTATTGTCTTAGCTGCTTCTGTTGTGTTGATTTTTGTGTCTGGTTTATGGTTCTTGAAGAAAAAGTCAAAATCTTTTGTTGGAAAATCCAAACGGTCTTTTATGACAACAGCTTTTCAGAGAGTTGGGTTCAATGAGGAAGATATAGTTCCTTTTTTAACCAATGAGAATTTGATTGGAAGAGGTGGGTCGGGTCAGGTTTATAAAGTGAAAGTGAAAACGGGTCAAGTAGTTGCTGTGAAGAAACTTTGGGGTGGTGGAACACAGAAACCTGATATAGAATCTGTGTTCAAGTCAGAGATTGAAACATTGGGTAGAATTCGACATGCTAATATAGTGAAACTATTGTTTTGTTGTAGTGCTGATGATTTCAGAGTTTTGGTTTATGAGTATATGGAAAATGGGAGTTTAGGTGATGTTTTGCATGAGGGGAAGTTTGAGGAATTGTTGGATTGGTCTAAGAGATTTGGAATTGCTTTAGGTGCTGCTAAAGGGTTGGCTTATTTACACCATGATTGTGTTCCTCCTATTGTTCATAGAGATGTTAAGAGTAATAACATATTGCTCGATCATGATTTTGTGCCCCGCGTCGCTGATTTTGGACTGGCTAAGACATTGCAGCGCGATGCAAGTGATGGTGCCATGTCTAGAGTTGCTGGTTCATATGGTTACATTGCTCCAGAATATGGTTATACATTGAAAGTGACTGAGAAGAGTGATGTGTATAGTTTTGGTGTGGTGTTGATGGAATTGATAACTGGGAAGAGGCCAAATGATTCATGTTTTGGTGAGAACAAAGATATTGTGAAGTGGATAACTGAGATTGCTTTATCAACATCACATGAAGGAGGAGGAAGTGACAACATTGGAGGAGGCCTAGATTGTGTTGTCACACAAATTGTGGACCCAAGATTGAGCTTAGAAACTTGTGATTATGAAGAGGTTGAAAAGGTTTTGAATGTGGCTCTACTTTGTACCTCAGCATTTCCAATTAATAGACCTTCAATGAGAAAGGTTGTTGAATTGCTTAAGGACCACAAACTAGCTCGTCTCAAGTCATGA 3021 0.3764 MQKKLFLILLFLLLCSNGSTFSLSSDYEILLHVKNTQIDDQNKSLYNWLPNTEHNPCNWTGITCDSRNKSVISIDLSEIGIYGDFPYNFCRIPTLQNLSLAVNYLGNEISSHSILPCSHLRLLNISENLFVGTLPEFNAEIFQLRVFDASQNNFSGDIPASFGRLPHLKVLILSNNLFTGNIPASFGLFPQLNVLILSGNLFTGTIPSFLGNLSELTQLELAFTETMKPGPIPSQLGNLTKLEILYLGNINLIGNIPDSIGNLISIKNFDLSQNSLSGKIPETISGMKNVKKIELYENNLSGEIPQGLTNLTNLFLLDLSQNALTGKFSEELASMNLSVLHLNDNFLSGEFPESLALNPNLQNLKIFNNSFSGKLPQDLGKYSAIEEIDVSTNNFIGELPKFICQKKQLQRFLTFNNRFSGSLPDEYGDCDSLHYVRIENNELSGPVPEKFWNLPNFSFLKMDHNRFEGSVSGSIRAKGMIKLVLAGNKFSGEFPVGVCELVELVQIDIGNNRFTGEVPTCITGLKKLQKLNMQGNMFTGKIPSNVSSWTQLTELNLSNNRFTGSIPPELGNLPGLIYLDLSVNSLTGKIPMELTSLRLNQFNVSNNKLSGEVPSDFNSEVYLSGLIGNPGLCSNVMKNFHPCSKHRPFSVVAIIVLAASVVLIFVSGLWFLKKKSKSFVGKSKRSFMTTAFQRVGFNEEDIVPFLTNENLIGRGGSGQVYKVKVKTGQVVAVKKLWGGGTQKPDIESVFKSEIETLGRIRHANIVKLLFCCSADDFRVLVYEYMENGSLGDVLHEGKFEELLDWSKRFGIALGAAKGLAYLHHDCVPPIVHRDVKSNNILLDHDFVPRVADFGLAKTLQRDASDGAMSRVAGSYGYIAPEYGYTLKVTEKSDVYSFGVVLMELITGKRPNDSCFGENKDIVKWITEIALSTSHEGGGSDNIGGGLDCVVTQIVDPRLSLETCDYEEVEKVLNVALLCTSAFPINRPSMRKVVELLKDHKLARLKS 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00682 1006 Pfam Leucine rich repeat 551 609 IPR001611 GO:0005515
Trre9g00682 1006 Pfam Leucine rich repeat 266 324 IPR001611 GO:0005515
Trre9g00682 1006 Pfam Leucine rich repeat 144 201 IPR001611 GO:0005515
Trre9g00682 1006 Gene3D Transferase(Phosphotransferase) domain 1 785 1004 - -
Trre9g00682 1006 FunFam Leucine-rich repeat receptor-like protein kinase TDR 332 645 - -
Trre9g00682 1006 SMART serkin_6 706 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00682 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Trre9g00682 1006 Gene3D Ribonuclease Inhibitor 309 644 IPR032675 -
Trre9g00682 1006 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 682 784 - -
Trre9g00682 1006 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 230 995 - -
Trre9g00682 1006 SUPERFAMILY Protein kinase-like (PK-like) 706 996 IPR011009 -
Trre9g00682 1006 ProSiteProfiles Leucine-rich repeat profile. 551 574 IPR001611 GO:0005515
Trre9g00682 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 111 206 - -
Trre9g00682 1006 FunFam Leucine-rich receptor-like protein kinase family protein 232 330 - -
Trre9g00682 1006 Pfam Leucine rich repeat N-terminal domain 24 65 IPR013210 -
Trre9g00682 1006 Gene3D Ribonuclease Inhibitor 23 308 IPR032675 -
Trre9g00682 1006 Gene3D Phosphorylase Kinase; domain 1 695 784 - -
Trre9g00682 1006 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 785 1005 - -
Trre9g00682 1006 SUPERFAMILY RNI-like 358 632 - -
Trre9g00682 1006 ProSitePatterns Protein kinases ATP-binding region signature. 712 735 IPR017441 GO:0005524
Trre9g00682 1006 ProSiteProfiles Protein kinase domain profile. 706 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00682 1006 SUPERFAMILY RNI-like 74 447 - -
Trre9g00682 1006 Pfam Protein kinase domain 708 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00682 Trre-Chr9 4938566 4941773 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00682 22 1000 Receptor kinase-like Gene Family AT5G65710 53.593 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g00682 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00682 - - tpra:123909546 1846.63