Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00680 ATGCGTTTCTTTCTTCTCCTTTTCTTTCTCTTCCATTTCCACCACCATGTTTTCTCTACTCCCATCTCACAATACCGTGCACTTCTCTCTTTTCGTGAATCAATTACCGATTCTACCCCTCCCACACTCTCTTCATGGAACAACTCAACCACTCACTGTTCATGGTTAGGTGTAACATGCGGCACACGCCGCCACGTCACCGCTTTAAACCTCACCGGACTTAGTCTCTCCGGCGAACTCTCCGATCATCTCTCTCACCTTCCATTTCTCACTAATCTCTCACTCGCTGATAATAAATTCTCCGGTCCTATTCCTCCGTCGCTCTCCGCTGTCTCCGGCCTCCGTTATCTTAACCTTTCCAACAATGTCTTCAACGGAACTTTTCCTTCCGAGCTTTCTCAGTTGAAGAATCTCGAAGTTCTTGATCTCTACAATAACAACATGACCGGAACGCTTCCTCTTGCGGTGACGGAGCTTCCGAATCTCCGTCATTTGCATCTCGGAGGTAACTACTTTAACGGTCAGATCCCGCCGGAGTATGGACTATGGCAGCGGTTAGAGTACTTAGCTGTTTCCGGTAATGAACTTATCGGAACTATTCCACCGGAGATCGGAAACTTAACAAGTCTCCGTGAGCTTTACATCGGTTACTACAACACCTACACCGGCGGCATTCCGCCGGAGATTGGAAACTTAACTGAGCTTATCCGTCTCGACGCTGCTTACTGCGGTTTATCCGGCGAGATACCGCCGGAGATGGGGAAGCTTCAGAAACTCGACACACTGTTTCTTCAAGTGAATGCACTTTCCGGTTCCCTGACATGGGAGCTTGGAAACTTGAAAAGCTTGAAATCAATGGATTTGTCTAATAACATGTTAACCGGTGAGATTCCGACGAGTTTCGGTGAAATGAAGAATCTAACACTTTTGAACCTTTTTAGAAATAAACTTCACGGTGCTATACCGGAGTTTATCGGTGATATGCCGGCGTTAGAGGTCGTTCAGTTATGGGAAAATAACTTTACCGGTAACATTCCGGTGAGTTTGGGAACAAATGGAAGATTAACTCTTTTAGACATTTCATCAAACAAGTTAACTGGAACACTTCCACCTTATTTGTGTTCTGGGAATCATCTTCAAACTTTGATAACTCTTGGGAATTTTCTGTTTGGTCCAATTCCTGAATCTCTTGGTAATTGTGAATCTTTGAATAGGATTCGTATGGGTGATAATTTTCTCAATGGTTCAATTCCTAAGGGTCTTTTTGGTCTTCCAAAACTCACTCAAGTTGAGCTTCAAGATAATTATTTATCTGGAAATTTTCCTGAAACTCATTCTGTTTCTGTTAATCTTGGTCAAATTACTTTGTCTAATAATCAACTTTCAGGAACTTTGCCACCTACTATTGGGAATTTTTCAAGCATGCAAAAGCTTCTTCTTGATGGTAACATGTTTTCTGGTAAGATTCCATCTCAGATTGGAAGGTTACAACAGCTTTCTAAGATTGATTTTAGTCATAATAAGTTTTCGGGTCCTATTGCTCCTGAGATTAGTCGATGCAAGCTTTTAACTTTTGTTGATCTTAGTCGTAATGAGTTATCCGGGGTTATCCCGAATGAGATTACTGGTATGAGGATATTGAATTACTTGAATATTTCGAGAAATCATTTAGTTGGTAGTATTCCTGGTTCTATAGCCTCAATGCAAAGCTTAACTTCTGTTGATTTTTCGTATAATAATCTATCCGGTTTGGTCCCTGGTACTGGTCAATTTAGTTACTTTAACTACACGTCTTTTTTGGGAAATCCTGATCTTTGTGGCCCTTATTTGGGTGCTTGTAAAGATGGTGTTGTTAATGGTGCTAACCAATCTCATCATGATAAGGGTCATCTTTCGTCTACCGTGAAGCTACTGCTTGTTATTGGGCTGCTTGCATGTTCCATTGTGTTTGCTATTGCAGCGATATTCAAGGCTCGGTCTTTGAAGAAGGCTAGTGAGGCCCGTGCGTGGAAATTGACTTCGTTTCAACGTTTGGATTTCACTGCTGATGATGTTTTGGATTCCTTGAAGGAAGATAACATCATAGGAAAAGGAGGTGCTGGCATTGTTTACAAAGGGGCAATGCCGAATGGGGAACTCGTTGCTGTTAAAAGGCTTCCGGTTATGAGTAGAGGTTCTTCTCATGATCATGGATTCAATGCCGAAATTCAAACATTGGGGAGAATCCGACACAGGCACATTGTTAGATTGTTGGGTTTTTGTTCGAACCATGAGACAAATCTTTTGGTTTATGAGTACATGCCTAATGGAAGTTTAGGTGAAGTTCTTCATGGAAAGAAAGGTGGTCATTTATATTGGGATACAAGGTATAAAATTGCCGTGGAAGCCGCCAAGGGACTTTGCTATTTACACCATGATTGTTCCCCGCTTATTGTTCACCGCGATGTTAAATCAAACAACATCCTTCTTGATTCAAATTATGAAGCCCATGTTGCTGATTTTGGGCTTGCCAAGTTCTTGCAAGATTCTGGAACATCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCAGAGTATGCGTATACATTGAAAGTTGATGAGAAAAGCGACGTGTACAGCTTCGGTGTTGTTCTTTTAGAGCTTGTAACTGGAAGGAAACCAGTAGGAGAATTTGGCGACGGTGTGGACATTGTGCAATGGGTCAGAAAAATGACAGACTCCAACAAGGAAGGAGTTCTAAAAGTTCTTGATCCAAGACTTTCCTCAGTTCCTCTTCATGAGGTCATGCATGTTTTCTATGTAGCCATTCTGTGTGTGGAAGAACAGGCAGTAGAAAGGCCAACTATGCGCGAAGTTGTTCAAATTCTGACCGAGCTTCCAAAGTCGCCCGATTCTAAACAAGGAGACTCAACAATCACAGAATCCTCTTTATCAACATCAAATGCTTTAGAATCTCCAACTTCAGCCTCTAAGGATCATCAACATCCTCCTCAATCGCCGCCACCTGATCTCTTAAGCATTTGA 3036 0.4206 MRFFLLLFFLFHFHHHVFSTPISQYRALLSFRESITDSTPPTLSSWNNSTTHCSWLGVTCGTRRHVTALNLTGLSLSGELSDHLSHLPFLTNLSLADNKFSGPIPPSLSAVSGLRYLNLSNNVFNGTFPSELSQLKNLEVLDLYNNNMTGTLPLAVTELPNLRHLHLGGNYFNGQIPPEYGLWQRLEYLAVSGNELIGTIPPEIGNLTSLRELYIGYYNTYTGGIPPEIGNLTELIRLDAAYCGLSGEIPPEMGKLQKLDTLFLQVNALSGSLTWELGNLKSLKSMDLSNNMLTGEIPTSFGEMKNLTLLNLFRNKLHGAIPEFIGDMPALEVVQLWENNFTGNIPVSLGTNGRLTLLDISSNKLTGTLPPYLCSGNHLQTLITLGNFLFGPIPESLGNCESLNRIRMGDNFLNGSIPKGLFGLPKLTQVELQDNYLSGNFPETHSVSVNLGQITLSNNQLSGTLPPTIGNFSSMQKLLLDGNMFSGKIPSQIGRLQQLSKIDFSHNKFSGPIAPEISRCKLLTFVDLSRNELSGVIPNEITGMRILNYLNISRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVVNGANQSHHDKGHLSSTVKLLLVIGLLACSIVFAIAAIFKARSLKKASEARAWKLTSFQRLDFTADDVLDSLKEDNIIGKGGAGIVYKGAMPNGELVAVKRLPVMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLYWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLSSVPLHEVMHVFYVAILCVEEQAVERPTMREVVQILTELPKSPDSKQGDSTITESSLSTSNALESPTSASKDHQHPPQSPPPDLLSI 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00680 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Trre9g00680 1011 Gene3D Ribonuclease Inhibitor 275 354 IPR032675 -
Trre9g00680 1011 Pfam Leucine rich repeat 113 171 IPR001611 GO:0005515
Trre9g00680 1011 Pfam Leucine rich repeat 523 581 IPR001611 GO:0005515
Trre9g00680 1011 Gene3D Ribonuclease Inhibitor 355 616 IPR032675 -
Trre9g00680 1011 MobiDBLite consensus disorder prediction 965 1011 - -
Trre9g00680 1011 Pfam Leucine Rich Repeat 282 302 IPR001611 GO:0005515
Trre9g00680 1011 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 339 961 - -
Trre9g00680 1011 SUPERFAMILY RNI-like 69 390 - -
Trre9g00680 1011 SMART serkin_6 689 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00680 1011 Gene3D Phosphorylase Kinase; domain 1 656 766 - -
Trre9g00680 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 977 - -
Trre9g00680 1011 SUPERFAMILY L domain-like 353 610 - -
Trre9g00680 1011 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00680 1011 MobiDBLite consensus disorder prediction 965 998 - -
Trre9g00680 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 332 617 - -
Trre9g00680 1011 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Trre9g00680 1011 Gene3D Ribonuclease Inhibitor 23 178 IPR032675 -
Trre9g00680 1011 Gene3D Ribonuclease Inhibitor 179 274 IPR032675 -
Trre9g00680 1011 Gene3D Transferase(Phosphotransferase) domain 1 767 984 - -
Trre9g00680 1011 SMART LRR_typ_2 135 158 IPR003591 -
Trre9g00680 1011 SMART LRR_typ_2 304 328 IPR003591 -
Trre9g00680 1011 SMART LRR_typ_2 280 303 IPR003591 -
Trre9g00680 1011 SMART LRR_typ_2 496 520 IPR003591 -
Trre9g00680 1011 SMART LRR_typ_2 568 591 IPR003591 -
Trre9g00680 1011 SMART LRR_typ_2 353 376 IPR003591 -
Trre9g00680 1011 SMART LRR_typ_2 159 182 IPR003591 -
Trre9g00680 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Trre9g00680 1011 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 81 324 - -
Trre9g00680 1011 SUPERFAMILY Protein kinase-like (PK-like) 684 960 IPR011009 -
Trre9g00680 1011 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00680 Trre-Chr9 4916234 4919793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00680 14 1002 Receptor kinase-like Gene Family AT5G65700 80.080 0.0 1598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g00680 Pkinase 9.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00680 - - ccaj:109800149 1739.55