Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00676 ATGATGGAAATTATGTCTCCGATCTATTTGCCTGAACTTGGAATGGATGATCTCAATTTCTTGCACCAATACCCTATGGATTCTCTTGCATCTGATGTATTTGACAACTTTGGATTTCACTTTGACGACAACTACGAAACAGTGCCAAATTGTTTCCCAGTTGAAACTCACCATCTTGATGATAACAACCTTGCTCAAACAAGACCAACCAAGAAGATCAAGACATCAACTAACACTTCTTCCTATTCATCCACACCTCAACTCATTTCATTTGAGCACTCCAATGCAACGCCAATTGCTTCTAATGAGGAATTTTACAGCCTTGATTATTCCGATGTAAAGCCTAAAATCGAGAAAGGATGTAGTGAAAACAAGGATTTTGCGGCAAATTATGATAACCGAGCGAATCAAACCAGGAATCGAACTCAAGCTCAAGAACATGTAATGGCCGAAAGAAAGCGAAGGGAAAAGCTCACTCGAAGTTTTATTGCTCTTTCGGCCATCGTTCCTGGCCTCAAGAAGATGGATAAAGCATCTGTGTTGGGAGATGCAATAAAATATATGAAACAACTACAAGCACGTTTGAAAACTCTTGAGGAACAAGTTGAAGACAACAAAAAAGCTGGATCCGCAGTTCAAGTCAAAAGATCTATTATCTTCACCGATAATAATGACCATGATGATGATGACAACAACAAGAAGACACTTGTTCCTGAAATCGAAGTTAGAGTTTCAAGCAAAGATGTACTCATCAAGATTCAATGTGATAAACACAGTGGACGTGCCGCTACGGTGCTTGGCCAATTAGAAAACCTTAATCTCATTGTCCAAAGTAGTAACTTTTTGCCCTTTGGAAACAACATTGTTGATGTAACTATTGTTGCTCAGATGAACAAGGAAAACTGTGTGACTGCAAAGGATCTCCTAGGAAGCATACGACAGGCTTTGATCAGTTGA 957 0.3929 MMEIMSPIYLPELGMDDLNFLHQYPMDSLASDVFDNFGFHFDDNYETVPNCFPVETHHLDDNNLAQTRPTKKIKTSTNTSSYSSTPQLISFEHSNATPIASNEEFYSLDYSDVKPKIEKGCSENKDFAANYDNRANQTRNRTQAQEHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAIKYMKQLQARLKTLEEQVEDNKKAGSAVQVKRSIIFTDNNDHDDDDNNKKTLVPEIEVRVSSKDVLIKIQCDKHSGRAATVLGQLENLNLIVQSSNFLPFGNNIVDVTIVAQMNKENCVTAKDLLGSIRQALIS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00676 318 Coils Coil 181 208 - -
Trre9g00676 318 SMART finulus 148 197 IPR011598 GO:0046983
Trre9g00676 318 PANTHER BHLH TRANSCRIPTION FACTOR 26 316 - -
Trre9g00676 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Trre9g00676 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 205 IPR036638 GO:0046983
Trre9g00676 318 Pfam Helix-loop-helix DNA-binding domain 145 192 IPR011598 GO:0046983
Trre9g00676 318 Gene3D - 132 208 IPR036638 GO:0046983
Trre9g00676 318 CDD bHLH_AtNAI1_like 144 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00676 Trre-Chr9 4885462 4888159 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00676 2 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.593 3.42e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g00676 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00676 - - cam:101507557 323.168