Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00674 ATGACATCAACTGATGAGTCATGGACAACTTGGCTATGTGATTTGGAACCAGAAGATTATAATTTAATCAATAACATTAACATAGCCACTTTGCAAGAAGAACATGAAAAGTTGCAACAAACTTTCTCTAGTGGTAGCCATTGTTCTCAAACAACCTCAAGCACTATGAGTAATTCCTCAAGTGATGTTGTTAACAGCTTTGAGGAAAGGCCTACAAAGATACTCAAGACTACCCCTTCAAACACAGGGTACCCTACACAAAAGAAAGATTCTAATTCCCATTCCTATATTCTTTGTTTTAACAATGAAAATCCAGAAACAGAACCAATAATGAACATTGATTCAACCTTGAAAAACAAAGCCAAGATTTTGAATCATGATGGGAAATCTTTAACCTCAAAAGGGGTATCAGAAAATCAAAAAAAAGAACCTAAACGCAATATTCAAGAAAGCCAAAAGACTGATTCAGTTACAAGAAATGCTCAAGATCACATAATTGCTGAGAGAAAAAGAAGAGAAAAAATTAGTCAACAGTTCATAGCTCTTTCAGCACTTATTCCAGACTTAAAAAAGATGGATAAAGCTTCTGTATTAGGAGATGCTATAACACATGTGAAACAGCTTCAAGAACAAGTGAAGGGTGTGTTGATGAATATAATCCAAGAGATAGAGAATCTTCATCTATGTGTCACAAGTAGTAGTACATTGCAATTTGGAACCACCAAACTTGACATAACCATCATAGCCGAGATGGAAGAGGAGTTCAGCTTAAGTGTGCAGGAGCTAGCTAGAAACCTTAAAGTTGGACTCTTGCAATTCATGTCATAG 828 0.3563 MTSTDESWTTWLCDLEPEDYNLINNINIATLQEEHEKLQQTFSSGSHCSQTTSSTMSNSSSDVVNSFEERPTKILKTTPSNTGYPTQKKDSNSHSYILCFNNENPETEPIMNIDSTLKNKAKILNHDGKSLTSKGVSENQKKEPKRNIQESQKTDSVTRNAQDHIIAERKRREKISQQFIALSALIPDLKKMDKASVLGDAITHVKQLQEQVKGVLMNIIQEIENLHLCVTSSSTLQFGTTKLDITIIAEMEEEFSLSVQELARNLKVGLLQFMS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00674 275 PANTHER BHLH TRANSCRIPTION FACTOR 213 272 - -
Trre9g00674 275 MobiDBLite consensus disorder prediction 41 89 - -
Trre9g00674 275 MobiDBLite consensus disorder prediction 136 152 - -
Trre9g00674 275 Gene3D - 154 215 IPR036638 GO:0046983
Trre9g00674 275 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Trre9g00674 275 MobiDBLite consensus disorder prediction 125 161 - -
Trre9g00674 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 219 IPR036638 GO:0046983
Trre9g00674 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Trre9g00674 275 SMART finulus 165 214 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00674 Trre-Chr9 4867326 4869488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00674 205 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 40.909 3.48e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g00674 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00674 - - tpra:123911002 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00674 9 4867326 4869488 Trre9g00674 9 4867326 4869488 ECH