Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00672 ATGGATAATTTAAACACATCTTCAAACTCAAACGCATCATCAACTAGCTGGTTATCTAATATGCTCTTGGAAGAAATGGACATAGAGGATTGTGATAATTTGTTTCAGCAATGTGAACAAAATTTGTTTGGTGATGAAGAGTTTCTTACACATAACATAGCTAGTGTTTTTCAACAAGATGAAATTTTACTAGAACAACAACCTTTGTTATCTTCTGAAAGCTATTATTTAGAAAGACCAAACAAAAAGTTGAAAACAAACACTGTTTTGCAAGATGTTTCCCCTGTTTCTTCTCCTTCTTCTATTACTTCTCAGATTTTGTCTTTTGAAAACAATTGTACCTTAAACACTACAAAACAGAACCAGGTTGTTCCATTGTCATCACCAAAACATGTACAACAACTACCTCAAAATCGAAAAGGGTCATTGCAAACTAAGAAACCACAAGGACAAGGAACTAAGAGGTCTGGGGCACATAATCAGGACCATATCATAGCTGAAAGAAAGAGAAGAGAGAAACTTAGCCAATGCTTAATTGCTTTAGCTGCTCTTATTCCTGGTTTGAAGAAGATGGACAAGGCTTCAGTCCTAGGAGATGCAGTAAAGTACGTGAAAGAGCTACAAGAACGTTTGAGGGTATTAGAGGAAAAGAATAAAAATAGTACTAGTCCTGTTGAGTGTGTAGTGACGGTGAATGGACCGCAGCTAAGTTATGAGTCATCAAGCAGTGATGAATCTGAAGCTGAAGCTGAAGCTGATCAAGCTGGTAGTGATAATAATGATGAAGTTCTTGGTCCCCATGATGTTGAAGCAAGAATCTTGGACAAGGACGTACTCATTAGGATTCACTGCAAAAAGCAAAAGGGTCTTTTGCTTAAAGTTTTGTTTGAGATTCAAAAGCTTCATCTCTTTGTTGTTAATAGCAGTGTCCTACCTTTTGGGGATTCTATCCTTGACATAACCATTGTTGCTCAGATGGGAACAGGGTACAAGTTGACAAGAGATGCCCTTATAAAAAACCTACGCGTGGCTGCATTAAGATCCATGTGA 1050 0.3743 MDNLNTSSNSNASSTSWLSNMLLEEMDIEDCDNLFQQCEQNLFGDEEFLTHNIASVFQQDEILLEQQPLLSSESYYLERPNKKLKTNTVLQDVSPVSSPSSITSQILSFENNCTLNTTKQNQVVPLSSPKHVQQLPQNRKGSLQTKKPQGQGTKRSGAHNQDHIIAERKRREKLSQCLIALAALIPGLKKMDKASVLGDAVKYVKELQERLRVLEEKNKNSTSPVECVVTVNGPQLSYESSSSDESEAEAEADQAGSDNNDEVLGPHDVEARILDKDVLIRIHCKKQKGLLLKVLFEIQKLHLFVVNSSVLPFGDSILDITIVAQMGTGYKLTRDALIKNLRVAALRSM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00672 349 Gene3D - 151 223 IPR036638 GO:0046983
Trre9g00672 349 Pfam Helix-loop-helix DNA-binding domain 162 208 IPR011598 GO:0046983
Trre9g00672 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 220 IPR036638 GO:0046983
Trre9g00672 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Trre9g00672 349 PANTHER BHLH TRANSCRIPTION FACTOR 34 346 - -
Trre9g00672 349 MobiDBLite consensus disorder prediction 121 162 - -
Trre9g00672 349 SMART finulus 164 213 IPR011598 GO:0046983
Trre9g00672 349 Coils Coil 197 217 - -
Trre9g00672 349 MobiDBLite consensus disorder prediction 236 264 - -
Trre9g00672 349 MobiDBLite consensus disorder prediction 121 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00672 Trre-Chr9 4854925 4859606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00672 14 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.177 2.28e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g00672 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00672 - - tpra:123910022 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00672 9 4854925 4859606 Trre15g03584 15 43552323 43554675 PCT