Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00663 ATGGCTACAGATATTGGCCTTCTTTCCAATATGACTCAGATCCAAAAATCTTCACAATCACAATCCCAACAACACCAACCAAACCCTAACACAAACACCACCATAGCCTCACAATCACCATCAACTTGGATGTGGAACCCTAAACACCACCACCAACAACATCAAAGAGAACAAGAAGAAGATGAAGATTCATGGGAGGTAAGAGCTTTTGCTGAAGACACAAGGAACATCATGAACACAACATGGCCACCAAGGTCTTACTCTTGTACTTTTTGTCGAAGAGAGTTCCGGTCAGCACAGGCTCTCGGCGGTCACATGAATGTTCACCGCCGAGACCGTGCTCGACTCCATCAAAATCAACCACCATTAAATTCATCCTCTCATCATCATCCTTCGTCTTCGCCGTTCATAAATATCCCTCCTCAAGAGCTTGTTGCAAATGCTGGATTGTGTTTTCTTTACCATTTACCAAACCCTAATAATCATAATAATGTTATTGCTTCTTCTTTCAATGGTTCTAATGGAGAATCTCCTTCAACTCTTCTTTCTATTTCATCAACAACATCTTATCCACCAAATAACTTGATGATGCAAATGCAAATGCAAACTTGTTCTCCTCCATCTTTTAATTTTCAGGCTAATTCAGCTAGGATGATAAATCATAGCATTTCTTCTTTTTCTAGCAAAGTGGATCAACAAACTGCTATTTGCACCTCCATTGATGATAATGGTCATGGAATTGAAGAGCTTGATCTTGAGCTCCGATTGGGGAACAAGCCAGCACCAACATGA 792 0.4066 MATDIGLLSNMTQIQKSSQSQSQQHQPNPNTNTTIASQSPSTWMWNPKHHHQQHQREQEEDEDSWEVRAFAEDTRNIMNTTWPPRSYSCTFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNSSSHHHPSSSPFINIPPQELVANAGLCFLYHLPNPNNHNNVIASSFNGSNGESPSTLLSISSTTSYPPNNLMMQMQMQTCSPPSFNFQANSARMINHSISSFSSKVDQQTAICTSIDDNGHGIEELDLELRLGNKPAPT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00663 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Trre9g00663 263 MobiDBLite consensus disorder prediction 1 64 - -
Trre9g00663 263 MobiDBLite consensus disorder prediction 1 48 - -
Trre9g00663 263 Gene3D Classic Zinc Finger 79 135 - -
Trre9g00663 263 SUPERFAMILY beta-beta-alpha zinc fingers 84 114 IPR036236 -
Trre9g00663 263 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Trre9g00663 263 PANTHER OS07G0101800 PROTEIN 59 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00663 Trre-Chr9 4804797 4805588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00663 41 260 C2H2 Transcription Factor Family AT4G17810 37.668 9.91e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g00663 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00663 - - tpra:123908941 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00663 9 4804797 4805588 Trre9g00663 9 4804797 4805588 ECH