Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00661 ATGATTGAAGTTAAGCTTCAAGATTTGCCCGTTGTTCATGGTCTTTATTGCCTTTTGCATGATATTTGTGAGATGAAAGGTCGAAAGAGAGGTTCTCCCGCCTTCAAAATTGCTACTTATGAGGGTGAACAATTTGAAATTATATCCCTGACAGGCACCTTACTACCTGGGAACAATGGCAGTAAAAGAATGGGTAGCTGGACGGTAACTCTAGGGGGTGGTCCTAAGGCAAAAATTTGGGGAGGTGTGGTTGCTGATAAGCTTATCGCGGCATCGGTTGTCAAGGTGATATTGGGTTGTTTTTCTGTGGATGGAAAAAAGGCTAGCTTGAATAACCAGAATTCTCAGCCTCCTCCGGTGCCACCGGTCGAATTTGCTGCTTCTGGGAGTACTCCAACTCCAACTGACTCCTCTGGAGACAATGAGGAGATTCCTTTTGATCAGGGAGGACCATCTGGAGTCTTCGACGATGATGATGATGATCTGCTCATTCCCAACCTGACCATGTACCAGCAAATGTGGGATCTTCTTGATCTACCGTGA 543 0.4567 MIEVKLQDLPVVHGLYCLLHDICEMKGRKRGSPAFKIATYEGEQFEIISLTGTLLPGNNGSKRMGSWTVTLGGGPKAKIWGGVVADKLIAASVVKVILGCFSVDGKKASLNNQNSQPPPVPPVEFAASGSTPTPTDSSGDNEEIPFDQGGPSGVFDDDDDDLLIPNLTMYQQMWDLLDLP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00661 180 MobiDBLite consensus disorder prediction 128 142 - -
Trre9g00661 180 MobiDBLite consensus disorder prediction 110 160 - -
Trre9g00661 180 Pfam Plants and Prokaryotes Conserved (PCC) domain 41 101 IPR005175 -
Trre9g00661 180 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 128 IPR039605 GO:0003680
Trre9g00661 180 Gene3D - 22 113 - -
Trre9g00661 180 SUPERFAMILY AF0104/ALDC/Ptd012-like 39 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00661 Trre-Chr9 4784361 4786444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00661 17 117 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 37.143 4.98e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00661 - - tpra:123905235 124.79