Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00635 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGAAGGAGACAATAATTCTGCTTCTGAAATAAGAGCAAAGCTTGAATCTATGGACTATAATGTTTCTACCTTCTACAACGAGAATGAAGCCTTGTCAGCGATCTCAACTAGTTCCAAAGGTTTCCATGTTGCCGTAGTGGAGGTGAGTATAAGCTGCCCTCATGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCAACCATTATGACTTCAAACAGTCAATGCATAAACACAATGATGAAGTGCATTGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCTGAGGACAAACTAAAAAACATTTGGCAGCATGTGGTTCACAAGGCATTCAATGGTGAGTCAAGTGCTCTGTCTGAATCACTAAAACCTGTCAAAGAATCGGTAGAATCTATGTTGCAGCTCGAAACAGACAACAAACTACATGAGAGTACAATATTAATAGATGTAGAGAAGGTGTCCAAGTTTAGTGATAATGAACACGAGCATTCTGCGGCAAGTGATAAATATCCGGCTCCTTCGACCCCTCAGTTAAAACAAGGTGCGAGGTTAGTGGACGATGGGGACTGCCACGAGCAAACTAATTGCTCAATAGAAAAAGAAAGTGGGGAACACGATGGTGGTGAATGTAAATTTGTCGAAACTTCATGTGAGAATGTGAATGCAGAAAGTTCTCCTCAACCAACGAAACCTCTAATTAAGGAGGAAGATGATTTTACCAATGGTTCGAAGGGTGAGAGTAGTGTTTTAACGAATCCACAATGTAAAAATTTACAGGCCGACACTGGTGGTAATGCATCTTCAAATGAAACAAGCGGTCCTAAGGATTCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAATTTTGTGAAGGCAGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGATCGTGCACACGGACGAAGATCGAAAATGGCCAAATCAAAGAGATCCGATGCAAAGGAACTATTGTAAACTGCAAAGACCAATCATGGCCTATCCACCATATAATTCTAATCACACCTTTCCTCCAGCTCCTGTATATCCTATGTGGGGACAACCTGGAAGTCAAACAGCCGGTGTACCGGTTTGGGGTCCACCTGGTTATCCTCTATGGCAACAACCTACAGAAAGTTGGCATTGGAAGCCTTATCCGGCGGTGCATGTAGATGCATGGGGTAATCCAATGCTGCCACTTCCTCAAACTCCTTGTTTACCCTACACTCAAAATATAGCTGGGTTGCATAATGCTAATGCAGTTGATTATAGATTTGGCATGCCTCAAAATTCCTTTGAGCATTATCCGGCAGAGGAGGTAGTGGACAAGGTTGTGAAGGAGGCAATAAGCAAACCATGGCTACCATTACCAATAGGCCTAAAACCTCCTTCAATGGATAGTGTTTTGGATGAACTTACAAAACAAGGCATCCCATTTAGCAAGAGCAAGGCCTCTAAACACTGCTGA 1662 0.4254 MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRAKLESMDYNVSTFYNENEALSAISTSSKGFHVAVVEVSISCPHGGFKFLENAKDLPTIMTSNSQCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNGESSALSESLKPVKESVESMLQLETDNKLHESTILIDVEKVSKFSDNEHEHSAASDKYPAPSTPQLKQGARLVDDGDCHEQTNCSIEKESGEHDGGECKFVETSCENVNAESSPQPTKPLIKEEDDFTNGSKGESSVLTNPQCKNLQADTGGNASSNETSGPKDSCENKANRKKMKVDWTPELHKNFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIVHTDEDRKWPNQRDPMQRNYCKLQRPIMAYPPYNSNHTFPPAPVYPMWGQPGSQTAGVPVWGPPGYPLWQQPTESWHWKPYPAVHVDAWGNPMLPLPQTPCLPYTQNIAGLHNANAVDYRFGMPQNSFEHYPAEEVVDKVVKEAISKPWLPLPIGLKPPSMDSVLDELTKQGIPFSKSKASKHC 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00635 553 MobiDBLite consensus disorder prediction 246 309 - -
Trre9g00635 553 Pfam Myb-like DNA-binding domain 314 363 IPR001005 -
Trre9g00635 553 MobiDBLite consensus disorder prediction 183 205 - -
Trre9g00635 553 Gene3D - 307 369 - -
Trre9g00635 553 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Trre9g00635 553 SUPERFAMILY CheY-like 16 134 IPR011006 -
Trre9g00635 553 SUPERFAMILY Homeodomain-like 310 368 IPR009057 -
Trre9g00635 553 FunFam Two-component response regulator-like APRR2 17 142 - -
Trre9g00635 553 FunFam Two-component response regulator 307 370 - -
Trre9g00635 553 MobiDBLite consensus disorder prediction 268 301 - -
Trre9g00635 553 Gene3D - 18 146 - -
Trre9g00635 553 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Trre9g00635 553 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 543 IPR044825 GO:0003700|GO:0045893
Trre9g00635 553 NCBIfam myb-like DNA-binding domain, SHAQKYF class 311 366 IPR006447 GO:0003677
Trre9g00635 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 308 367 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00635 Trre-Chr9 4483968 4488621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00635 1 542 Response Regulator Gene Family AT4G18020 49.212 8.27e-142 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre9g00635 Response_reg 2.5e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00635 - - gmx:100784905 866.3