Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00610 ATGGAATCCCCTGAACCAAACCATGATCCTGAACCACAACAAGCACTTCCTCACCCTCATTTTCCTCACAACCTGCAAAGAGAAACAATGACTTTGGTGGGTCCCAATCCGTTTACAAATAGTACTGTTGCCACGACAGTGATGACACCTATCACTGCTCGGTTTCCTTTGAGCAACATGAACACTAACCATTCTCCTCATTCTGATGGTTTCAATAATACTATAACTGCACCTCCAGCTGCTCATTCCACGACCTCGATGCCATGCATGGAGGTGGTGGGAGATTCTTCCTCCAACTTCCCCTCTGACTCTGGTTCGGTTAAGAGAAAGAGGGGGAGGCCAAGGAAGTATTTTGCTAAAGATGAGGCTGATTTGGGTTCGGGCTCTGGCTCGGGTCAAGCTCAAGCTGTTGTTGCTCCTCCTCTTCCTCCTGCTACTGCTACTCCACTTCCTGACTCTGTGGTGAAGAGTACTAGAAGAAGAGGAAGGCCTCGTGGATCTTTTAAGCGGAAGAACAATGTTGAAGTCCATGGTGGACTTGCTGGTACATGCTTTTCCCCATATGTGATCATTGTGAATCCGGGAGAGGACGTTGTTGCGAAAATCGGTGATGCTTTTCGCGGAGAACCAAATTTGGAGGTGTGCATTCTTTCTGCACATGGTTCACTTGGCATGGTTGCCCTTCATCAACCGGGCAAAATTGCTACTTATGAGGGTGAACAATTTGAAATTATATCCCTGACAGGCACCTTACTACCTGGGAACAATGGCAGTCAAAGAATGGGTCGCTGGACGGTAACTCTAGGGGGTGGTCCTAAAGCAAAAATTTGGGGAGGTGTGGTTGCTGATAAGCTTATCGCGGCATCGGTTGTCAAGGTGATATTGGGTTGTTTTCCTGTGGATGTAAAAGAGGCTAGCTTGAATAACCAGAATTCTCAGCCTCCTCCGGTGCCACCCGTTGAAGTTGCTGCTTCTGGGAGTACTCCAACTCCAACTGACTCCTCTGGAGACAATGAGGAGATTCCTTTTGATCAGGGAGGACCATCTGGAGTCTTCGACGATGATGATGATCTGCTCATTCCCAACCTGACCATGTACCAGCAAATGTGGGATCTCCTTGATCTTCCGTGA 1131 0.481 MESPEPNHDPEPQQALPHPHFPHNLQRETMTLVGPNPFTNSTVATTVMTPITARFPLSNMNTNHSPHSDGFNNTITAPPAAHSTTSMPCMEVVGDSSSNFPSDSGSVKRKRGRPRKYFAKDEADLGSGSGSGQAQAVVAPPLPPATATPLPDSVVKSTRRRGRPRGSFKRKNNVEVHGGLAGTCFSPYVIIVNPGEDVVAKIGDAFRGEPNLEVCILSAHGSLGMVALHQPGKIATYEGEQFEIISLTGTLLPGNNGSQRMGRWTVTLGGGPKAKIWGGVVADKLIAASVVKVILGCFPVDVKEASLNNQNSQPPPVPPVEVAASGSTPTPTDSSGDNEEIPFDQGGPSGVFDDDDDLLIPNLTMYQQMWDLLDLP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00610 376 MobiDBLite consensus disorder prediction 325 339 - -
Trre9g00610 376 CDD DUF296 187 296 IPR005175 -
Trre9g00610 376 MobiDBLite consensus disorder prediction 1 22 - -
Trre9g00610 376 Gene3D - 187 311 - -
Trre9g00610 376 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 77 326 IPR039605 GO:0003680
Trre9g00610 376 MobiDBLite consensus disorder prediction 308 354 - -
Trre9g00610 376 MobiDBLite consensus disorder prediction 92 171 - -
Trre9g00610 376 Pfam Plants and Prokaryotes Conserved (PCC) domain 187 298 IPR005175 -
Trre9g00610 376 SMART AT_hook_2 158 170 IPR017956 GO:0003677
Trre9g00610 376 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Trre9g00610 376 ProSiteProfiles PPC domain profile profile. 182 319 IPR005175 -
Trre9g00610 376 SUPERFAMILY AF0104/ALDC/Ptd012-like 184 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00610 Trre-Chr9 4330036 4332158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00610 105 341 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 33.077 3.29e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00610 - - tpra:123905235 352.829