Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00609 ATGGAATCCCCTGAACCAAACCATGATCCTGAACCACAACAAGCACTTCCTCACCCTCATTTTCCTCACAACCTGCAAAGAGAAACAATGACTTTGGTGGGTCCCAATCCGTTTACAAATAGTACTGTTGCCACGACAGTGATGACACCTATCACTGCTCGGTTTCCTTTGAGCAACATGAACACTAACCATTCTCCTCATTCTGATGGTTTCAATAATACTATAACTGCACCTCCAGCTGCTCATTCCACGACCTCGATGCCATGCATGGAGGTGGTGGGAGATTCTTCCTCCAACTTCCCCTCTGACTCTGGTTCGGTTAAGAGAAAGAGGGGGAGGCCAAGGAAGTATTTTGCTAAAGATGAGGCTGATTTGGGTTCGGGCTCTGGCTCGGGTCAAGCTCAAGCTGTTGTTGCTCCTCCTCTTCCTCCTGCTACTGCTACTCCACTTCCTGACTCTGTGGTGAAGAGTACTAGAAGAAGAGGAAGGCCTCGTGGATCTTTTAAGCGGAAGAACAATGTTGAAGTCCATGGACTTGCTGGTACATGCTTTTCCCCATATGTGATCATTGTGAATCCGGGAGAGGACGTTGTTGCGAAAATCGGTGATGCTTTTCGCGGAGAACCAAATTTGGAGGTGTGCATTCTTTCTGCACATGGTTCACTTGGCATGGTTGCCCTTCATCAACCGGGCAAAATTGCTACTTATGAGGGTGAACAATTTGAAATTATATCCCTGACAGGCACCTTACTACCTGGGAACAATGGCAGTCAAAGAATGGGTCGCTGGACGGTAACTCTAGGGGGTGGTCCTAAAGCAAAAATTTGGGGAGGTGTGGTTGCTGATAAGCTTATCGCGGCATCGGTTGTCAAGGTGATATTGGGTTGTTTTCCTGTGGATGTAAAAGAGGCTAGCTTGAATAACCAGAATTCTCAGCCTCCTCCGGTGCCACCCGTTGAAGTTGCTGCTTCTGGGAGTACTCCAACTCCAACTGACTCCTCTGGAGACAATGAGGAGATTCCTTTTGATCAGGGAGGACCATCTGGAGTCTTCGACGATGATGATGATCTGCTCATTCCCAACCTGACCATGTACCAGCAAATGTGGGATCTCCTTGATCTTCCGTGA 1128 0.4805 MESPEPNHDPEPQQALPHPHFPHNLQRETMTLVGPNPFTNSTVATTVMTPITARFPLSNMNTNHSPHSDGFNNTITAPPAAHSTTSMPCMEVVGDSSSNFPSDSGSVKRKRGRPRKYFAKDEADLGSGSGSGQAQAVVAPPLPPATATPLPDSVVKSTRRRGRPRGSFKRKNNVEVHGLAGTCFSPYVIIVNPGEDVVAKIGDAFRGEPNLEVCILSAHGSLGMVALHQPGKIATYEGEQFEIISLTGTLLPGNNGSQRMGRWTVTLGGGPKAKIWGGVVADKLIAASVVKVILGCFPVDVKEASLNNQNSQPPPVPPVEVAASGSTPTPTDSSGDNEEIPFDQGGPSGVFDDDDDLLIPNLTMYQQMWDLLDLP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00609 375 MobiDBLite consensus disorder prediction 307 353 - -
Trre9g00609 375 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 77 325 IPR039605 GO:0003680
Trre9g00609 375 MobiDBLite consensus disorder prediction 1 22 - -
Trre9g00609 375 Gene3D - 186 310 - -
Trre9g00609 375 MobiDBLite consensus disorder prediction 324 338 - -
Trre9g00609 375 SUPERFAMILY AF0104/ALDC/Ptd012-like 183 303 - -
Trre9g00609 375 Pfam Plants and Prokaryotes Conserved (PCC) domain 186 297 IPR005175 -
Trre9g00609 375 ProSiteProfiles PPC domain profile profile. 181 318 IPR005175 -
Trre9g00609 375 CDD DUF296 186 295 IPR005175 -
Trre9g00609 375 SMART AT_hook_2 158 170 IPR017956 GO:0003677
Trre9g00609 375 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Trre9g00609 375 MobiDBLite consensus disorder prediction 92 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00609 Trre-Chr9 4330036 4332158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00609 107 297 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 37.755 2.06e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00609 - - tpra:123905235 353.599