Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00599 ATGAAGTGTTTTTTCTTCAAACATAAATCAAAATCAGACCCAGATTTAAACCATAAAAAGAAGAAAAATCATGTATCAAAAAAATCTACAAGTGCTCATTCATCACCAAGGAGTATAAAAGAGTTGTACAAAGAGAAAGAACACAATTTCAGAGTTTTTACTCCAAGGGAGCTTATAAATGCAACAAATGGTTTCAATAAAGTGCTTAAAATTGGAGAAGGAGGTTTTGGTAAAGTATATAGAGGAACAATTACTCCTGAAAATGGAATTGGTAACTCAATTGTTGTTGCAATAAAAAAACTCAACACTCGTGGATTTCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTAGGAATTGTGAATCATCCAAATTTGGTTAAGCTTTTGGGATATTGTTCTGTTGATGGTAAAAATGGAATCCAACGGTTGTTAGTGTATGAGTTTATGCCTAATAGGAGTTTAGAAGATCATCTTTTCAGTCGTTCTTTACCTCTTTTGCCTTGGAAAACAAGATTACAGATCATGCTTGGTTCTGCTCAAGGATTACAGTATCTACATGAGGGATTGGAAATTCAGGTGATCTATAGAGATTTCAAATCATCAAATGTGTTGTTGGACAAGAATTTCCATCCTAAGCTCTCAGATTTTGGTCTTGCTAGGGAGGGCCCAACAGGTGACAACACTCATGTCTCTACTGCGGTAGTTGGGACAAGGGGATATGCTGCACCAGAGTATATTGAAACAGGTCATCTAAAATCAAAGAGTGATGTTTGGAGTTTCGGTGTAGTATTGTATGAGATTCTCACAGGAAGACGAACAATTGAAAGAAATCTTCCGATAGCGGAACAAAAGCTTATAGAATGGGTTAAAAACTACCCTGCTGATACTAGCAGATTCAGTTTGATTATAGACCCTCGACTCGCGAAACAATATTCTCTTGATTCAGCTAGGAAAATTGCTAAGTTGGCAGATAGTTGCTTGAAGAAAAATGCTGAAGATAGGCCTTCAATGAGTCAAGTAGTGGAAAGTTTGAAAGAAGCATTGGAATGTTCATAA 1062 0.3625 MKCFFFKHKSKSDPDLNHKKKKNHVSKKSTSAHSSPRSIKELYKEKEHNFRVFTPRELINATNGFNKVLKIGEGGFGKVYRGTITPENGIGNSIVVAIKKLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGKNGIQRLLVYEFMPNRSLEDHLFSRSLPLLPWKTRLQIMLGSAQGLQYLHEGLEIQVIYRDFKSSNVLLDKNFHPKLSDFGLAREGPTGDNTHVSTAVVGTRGYAAPEYIETGHLKSKSDVWSFGVVLYEILTGRRTIERNLPIAEQKLIEWVKNYPADTSRFSLIIDPRLAKQYSLDSARKIAKLADSCLKKNAEDRPSMSQVVESLKEALECS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00599 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Trre9g00599 353 CDD STKc_IRAK 71 348 - -
Trre9g00599 353 PANTHER OS01G0588500 PROTEIN-RELATED 26 348 - -
Trre9g00599 353 SUPERFAMILY Protein kinase-like (PK-like) 47 346 IPR011009 -
Trre9g00599 353 Pfam Protein tyrosine and serine/threonine kinase 70 346 IPR001245 GO:0004672|GO:0006468
Trre9g00599 353 ProSiteProfiles Protein kinase domain profile. 65 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00599 353 ProSitePatterns Protein kinases ATP-binding region signature. 71 100 IPR017441 GO:0005524
Trre9g00599 353 PIRSF ILK 15 353 - -
Trre9g00599 353 FunFam PTI1-like tyrosine-protein kinase 3 151 352 - -
Trre9g00599 353 MobiDBLite consensus disorder prediction 8 38 - -
Trre9g00599 353 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Trre9g00599 353 Gene3D Transferase(Phosphotransferase) domain 1 151 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00599 Trre-Chr9 4274262 4276373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00599 3 346 Glycoside Hydrolase AT3G07070 42.577 1.38e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre9g00599 PK_Tyr_Ser-Thr 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00599 - - gmx:100305390 568.54