Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00590 ATGAATCATCACTACCTTACACATCCTAGTATGAATTTTCAACAACTTCCTCATCTCTTTCAACAAGAGATCAATCCTATTAAGAAGGAAGATGCAAGATGTGCACAAATGACAATATTTTATGATGGGAAAGTGGTTGTGCTTGATGATATTACAGCTGAAAAAGCCAAGGACATTATGGTCTTTTCTACTAACAACTATGCTGCTTATCCTTCATTTCTTGCTGGAAATTCTGCCAATAAGACTGTTCAAGTACCATCTACAGTACCTGTTATTTATGATTTACCAATGACTAGAAAAGCTTCACTTCATAGATTCTTGGAGAAAAGGAGGAATAGAATTGCTGCAAGGGGACCCTACCAAACAACTTATCCAACATCAACCCTTAATAAGACAATTGATGAATCCATGGCATGGCTCTCTTTGACACCACAATCACCACAACACAAATCTGAGTGTAGCTCCACCTCAGTGTTATTTTAA 483 0.3706 MNHHYLTHPSMNFQQLPHLFQQEINPIKKEDARCAQMTIFYDGKVVVLDDITAEKAKDIMVFSTNNYAAYPSFLAGNSANKTVQVPSTVPVIYDLPMTRKASLHRFLEKRRNRIAARGPYQTTYPTSTLNKTIDESMAWLSLTPQSPQHKSECSSTSVLF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00590 160 SMART tify_2 30 65 IPR010399 -
Trre9g00590 160 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 143 IPR040390 -
Trre9g00590 160 Pfam Jas motif 96 121 IPR018467 -
Trre9g00590 160 Pfam tify domain 35 60 IPR010399 -
Trre9g00590 160 ProSiteProfiles Tify domain profile. 30 65 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00590 Trre-Chr9 4223714 4224858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00590 29 142 Tify Gene Family AT1G19180 35.115 1.01e-19 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre9g00590 tify 5.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00590 K13464 - mtr:112421766 194.512