Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00586 ATGGAACTTTATTTTAAGCACCAAATTGGTTTAGTTTGTGTCATAATGCTCTTACCTATCATGTGTAACTCTCAAGACTCTTTTATTTGCTCTAGAGCAACTTATTATGGTAGCCCAGATTGTTATGGAAATCCAAAGGGAGCTTGTGGCTATGGCGATTACGGACAGACAGTGAACGATGGTAATGTCGCCGGCGTATCCTGGCTGTGGAAGAATGGATCTGGTTGTGGTGCATGCTATCAAGTGAGGTGCAAAATACCACAATTGTGTGACGAGAATGGAGCTTATGTGGTGGTGACCGATCATGGTGTGGGAGATAGGACAGACTTCGTCATGAGTCCACGTGGCTATTCAAGATTGGGTATAAATGCTGATGCATCTGCAGAACTTTTCAAATATGGTGTGGTTGATATAGAATATAAAAGAGTCCCTTGCAAATACAATGGTTATAACATCTTGCTTAAGGTCCATGAACGCAGTAAAAACCCTCACTACTTGGCTATTATCATTCTCTATGTTGGTGGAACAAATGATATAACTGATGTTCAATTGTGGCAGGAAGATTGTCAAGAGTGGAGGCCAATGCGTAGGGTGTTTGGGACAGTGTTTGACGCAGAGAACCCTCCAAGAGGTCCTATCAAGTTGAAGTTTCAAGTGAGTGGTAGTGCTGGCCTTTATTGGGTGGAATCCAAGAGTGTTATATCTAGTGATTGGGAAGCTGGGGCTGTTTATGACTCACAAATTCAGTTTGATTAA 756 0.4206 MELYFKHQIGLVCVIMLLPIMCNSQDSFICSRATYYGSPDCYGNPKGACGYGDYGQTVNDGNVAGVSWLWKNGSGCGACYQVRCKIPQLCDENGAYVVVTDHGVGDRTDFVMSPRGYSRLGINADASAELFKYGVVDIEYKRVPCKYNGYNILLKVHERSKNPHYLAIIILYVGGTNDITDVQLWQEDCQEWRPMRRVFGTVFDAENPPRGPIKLKFQVSGSAGLYWVESKSVISSDWEAGAVYDSQIQFD 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00586 251 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Trre9g00586 251 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Trre9g00586 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Trre9g00586 251 Gene3D - 146 247 IPR036749 -
Trre9g00586 251 PANTHER EXPANSIN-B3 18 250 - -
Trre9g00586 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Trre9g00586 251 CDD DPBB_EXLB_N 31 145 - -
Trre9g00586 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Trre9g00586 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Trre9g00586 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Trre9g00586 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Trre9g00586 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Trre9g00586 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Trre9g00586 251 Gene3D - 19 145 IPR036908 -
Trre9g00586 251 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00586 Trre-Chr9 4193950 4195731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00586 11 248 Expansin Gene Family AT4G17030 60.251 1.30e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00586 - - ccaj:109800044 451.825