Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00585 ATGTCACTCTGTAATGGACATTCTGAACAAGAATTAGGGATTCCGTTGATGGCAAATGGAGGCTCTAGTATTCTTGCTCGGCCAAAGATTAAACACCGTGCAGTTTCTGCAGTTCGTGATTATCCAGAAGAATGTGGACTATTTGGTTCTGCTGATGGTACATCTGTTGAGGATAAGAGTGAAGAATGTTTAGGTGGTGACGCTGTTAGTCCCAACCATGAAGATGATTTTCAACATTCTGAGGTTGATAAGAATTTGTTTGATACAGAGACTCTTGAACAAACACGTGACTGTAGTTTGAAGAAGGAAGATCTTGTTGTTTTATCTGATCAAGTGGAAGAGGATACTTTGGCTAACGATGAGGCTGCAAAAGTAGCATTGGTGGGCATGGAAACTTCAGATATGGAATTTGCAACTGAAGTGAAAAAGGAAGATCATATGGTCTCATCTCATCAAGAGGATGGGGATACTTTTGCTAATAATGAACCTGCAAAAGTTGCATCGGTGGACATGGAAAATGGAGATATGGAGTTTGCGACTGAAGTGAAAAAGGAAGATCAGGTCTCATCTCATCAAGTCGACCAGCCTACATTGGATAATGTCGAACAAGAAAATGTGGCATTGGCGGACATGGAAACTTTGGATGCAGAATTTGCAACTGAAAGCTGTAGTCAGAAGAAGGAAAATCCTACGGACATGTCTACTTTTGCTACTGATGAACCTGCAAAACTGGCAGTGGTGGGCACAGAAACTTTGGATACTGAATTTGCAACAGAAGACTCCGTAAAACAAGATTTCTGTAATATATCGTCTCCATTTGGTGAGGTAGCTATGTATGATGACGCAAAGTCCTTGACATCCAATATCGATATAGGTGGTTCTGGTGCTCGTATGGAGGAGACTGTAACTAAAAAGTATCCTCCTCGTAAAAAAGTTGCAGCGATCAGAGATTTTCCACGTTTATGTGGACGCAATGCTCCCCTTCTTACTAAGGACGAGTGTTTAAAGGAGCTTTCTTCTTTGAATAAAAGGACAGTGGGTCAAACTGACGTAAAAGAAGCAGATAATAACAAGAGAAAGCTTGCTAACATTGTTCAAGCTGACTCTGAAGGGAATGCTACACAGAGAGTTAAGAAGATGGATGTAGTCGAACCATCTTCTGAGATGGGATTGGCACTGGATAACACAAAAGAAATGAACACTCAACTTTCTGAAAAATATAATCTCCATCAGGTTAACATAAATCCAAAGGCAGTGGTTAAAGAGGAAAACACGAACACTGTTCAGGTCGAGGGAACATCTGGCAGGAAAATAGTGCTAGGTTTGATGTCTAAATCAGAATGTCCTTGGAGATCTGATATCATTTCCCCCAAATTTAAACCAGCAACAATAGGTGGCACAGATGAAAGGAAGGGAAAGAAAGTTGATTTTTATGCTCAGCTAGACAGGTCTAAAACTGCTGTCAAGACGAAACATGTACCGAATCATTCTGAGCATGTGCAGTTGAAAAAGAAAAAAGCAAATTCTAATTCTGATGACATGGGCGAATTAGTAAGATGGGAGAATAATTCTCTAGACCCTAATAATAATAGCAAAAACTTTAAAAGTGTCCCAAAATCACATGGTGTAAATGTTCCTCCTCTTGGTCGTAGTAATTTCAGTGGTCGTGAGAATGACTCAATGGCCCGGAATAAAGTGAGGAATGCATTGCGCCTGTTCCAAGCTGTTTCTAGAAAACTTTTGCAGGAAGCGGAAGCAAAAGCAAAGTCGAACGAGAAAGAAAGAAGGAGGTTTGATTTACAAGCTGCAAAAATACTTAAGGAGAAAGGGAACTATGTTAACGAAGGGGAGAAGATCATGGGAGCTGTCCCCGGGGTTGAAGTCGGTGATGAATTCCAATACAGAATAGAGCTTAATATAATCGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATATGAAGCACAAAAATAAAATGCTTGCAACTAGTATTGTTGCGTCAGGGGGCTATTCTGATGAATTAGATAATACAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGATAAAGACCCAGAAGATCAGAAGCTTGAAAGGGGCAATCTTGCTTTGAAGAACAGCAGTGAGGAAAAGAATCCTGTTAGGGTGATACGGGGTTCGGAGTCAATGGATGGAAAAAGCAGGATATATGTTTATGATGGACTTTATCTAGTTGAGTCATGTTGGCAGGAAATGGGGACACATGGGAAGCTGGTTTATAAGTTTCGTTTGCAAAGAATCCCAGGTCAACCAGAGCTTGCCTTGAAGGAAGTGAAGAAATCTAAAAAGTTCAAAATAAGAGAAGGTCAATGCGTCAAAGATATTTCCTACGGTAAAGAGAGAATTCCCATATGTGCTGTGAACACTATAGATGACGAGAAGCCTCCTACATTTAAATACATAACTAAGATGATATATCCTGATTGTTGCAATCTTGTCCCTCCAGAAGGCTGTGGTTGTACTAATGGATGCTCTGACCATGCAAAATGTTCCTGTGTACTAAAAAATGGGGGAGAGATTCCATTCAATCATAATGGGGCTATTGTAGAAGCAAAGTCTCTGGTTTATGAGTGTGGGCCTAAATGCAAGTGCCCTCCAACATGCCATAACAGAGTCAGCCAACTTGGCATAAATATTCAACTCGAAATTTTTAAAACCAATTCAATGGGATGGGGTGTAAGATCCCTAAATTCCATCCCTTCAGGAAGTTTTATATGTGAATATATAGGAGAGGTTCTTGAAGACAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACAAAACCAACAATACTCTTTGGGATGGACTTTCGACACTTATACCAGATTCACACTCAAGTTCCTGTGAAGTAGTGAATGATGTTGGCTTCACTATCGATGCTGCTCAGTTTGGTAATGTGGGGAGATTCATCAACCACAGTTGCTCCCCTAATCTCTATGCTCAGAATGTCCTTTTTGATCATAATGACATCAGGATTCCTCACGTCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGAGTTACGATTACAATTATATGATAGATCAAGTCCGTGATTCTGATGGCAATATCAAAAAGAAGTACTGCTATTGTGGTTCTGTGGAATGTACTGGTTTCCTCCCCCGGAGGTAA 3219 0.4035 MSLCNGHSEQELGIPLMANGGSSILARPKIKHRAVSAVRDYPEECGLFGSADGTSVEDKSEECLGGDAVSPNHEDDFQHSEVDKNLFDTETLEQTRDCSLKKEDLVVLSDQVEEDTLANDEAAKVALVGMETSDMEFATEVKKEDHMVSSHQEDGDTFANNEPAKVASVDMENGDMEFATEVKKEDQVSSHQVDQPTLDNVEQENVALADMETLDAEFATESCSQKKENPTDMSTFATDEPAKLAVVGTETLDTEFATEDSVKQDFCNISSPFGEVAMYDDAKSLTSNIDIGGSGARMEETVTKKYPPRKKVAAIRDFPRLCGRNAPLLTKDECLKELSSLNKRTVGQTDVKEADNNKRKLANIVQADSEGNATQRVKKMDVVEPSSEMGLALDNTKEMNTQLSEKYNLHQVNINPKAVVKEENTNTVQVEGTSGRKIVLGLMSKSECPWRSDIISPKFKPATIGGTDERKGKKVDFYAQLDRSKTAVKTKHVPNHSEHVQLKKKKANSNSDDMGELVRWENNSLDPNNNSKNFKSVPKSHGVNVPPLGRSNFSGRENDSMARNKVRNALRLFQAVSRKLLQEAEAKAKSNEKERRRFDLQAAKILKEKGNYVNEGEKIMGAVPGVEVGDEFQYRIELNIIGLHRQIQGGIDYMKHKNKMLATSIVASGGYSDELDNTDVLIYTGQGGNVMSSDKDPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKSRIYVYDGLYLVESCWQEMGTHGKLVYKFRLQRIPGQPELALKEVKKSKKFKIREGQCVKDISYGKERIPICAVNTIDDEKPPTFKYITKMIYPDCCNLVPPEGCGCTNGCSDHAKCSCVLKNGGEIPFNHNGAIVEAKSLVYECGPKCKCPPTCHNRVSQLGINIQLEIFKTNSMGWGVRSLNSIPSGSFICEYIGEVLEDKEAEQRTGNDEYLFDIGNNKTNNTLWDGLSTLIPDSHSSSCEVVNDVGFTIDAAQFGNVGRFINHSCSPNLYAQNVLFDHNDIRIPHVMLFAAENIPPLQELSYDYNYMIDQVRDSDGNIKKKYCYCGSVECTGFLPRR 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00585 1072 SMART set_7 897 1046 IPR001214 GO:0005515
Trre9g00585 1072 SUPERFAMILY PUA domain-like 605 777 IPR015947 -
Trre9g00585 1072 Gene3D - 603 784 IPR036987 -
Trre9g00585 1072 ProSiteProfiles Post-SET domain profile. 1054 1070 IPR003616 -
Trre9g00585 1072 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 485 1072 IPR025794 GO:0016571
Trre9g00585 1072 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 444 1063 - -
Trre9g00585 1072 MobiDBLite consensus disorder prediction 486 558 - -
Trre9g00585 1072 SMART G9a_1 616 768 IPR003105 -
Trre9g00585 1072 MobiDBLite consensus disorder prediction 522 538 - -
Trre9g00585 1072 Pfam SET domain 908 1040 IPR001214 GO:0005515
Trre9g00585 1072 ProSiteProfiles Pre-SET domain profile. 834 894 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre9g00585 1072 Pfam Pre-SET motif 793 889 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre9g00585 1072 ProSiteProfiles SET domain profile. 897 1040 IPR001214 GO:0005515
Trre9g00585 1072 CDD SET_AtSUVH-like 816 1041 - -
Trre9g00585 1072 ProSiteProfiles YDG domain profile. 621 764 IPR003105 -
Trre9g00585 1072 SUPERFAMILY SET domain 780 1041 IPR046341 -
Trre9g00585 1072 Coils Coil 581 601 - -
Trre9g00585 1072 SMART preset_2 790 881 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre9g00585 1072 MobiDBLite consensus disorder prediction 486 512 - -
Trre9g00585 1072 Pfam SAD/SRA domain 620 768 IPR003105 -
Trre9g00585 1072 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 603 781 - -
Trre9g00585 1072 SMART PostSET_3 1054 1070 IPR003616 -
Trre9g00585 1072 Gene3D SET domain 785 1069 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00585 Trre-Chr9 4189667 4193246 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00585 552 1067 Su(var)3-9 homologs AT5G04940 39.775 4.55e-115 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre9g00585 SAD_SRA 1.3e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00585 K11420 - gmx:100803378 1127.08