Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00583 ATGAATTCGGAGCCACCGAGGGGAATGGTAGAATCAATGTCACTCTTTAATGGACATTCGGAACAAGAATTAGGGATTCCGTTGATGGAAAATGGAGGCTCTAGTATTCTTGCTCGTCCCATGGTTAAGAGCTACGCAGTTTCCGCATTTCGTGATTTTCCAGAAGCATGTGGACCATTTGGTTCTGCTGATGGTACATCTGTTGAGGATAAGAGTGAAGAATGTTCAGGTGGTGAAGCTGTTAGTCCCAACCTTGAAGACGATTCTCAATATTCCGAGGTTGATCAGAATTTGTTTGATACAGAGACTCTTGAACAAACAAGTGACTATAGTTTGAAGAAGGAAGATCTTGTTGTTTTATCGGATCAAGTGGATGGGGATACTTTGGCTAATAATGAAGCTGCAAAAGTTGCATTGGTGGACATGGAAACTTCGGATATGGAATTTGCAACTGAAGTGAAAAAGGAAGATCATATGGTCTCATCTCATCAAGTCGACCAGCCTACATTGGATAATGCCGAACAAGCAAATGTGACATTGGCGGACATGGAAACTCTGGATGCAGAATTTGCAACTGGAGATATGGAGTTTGCAACTGAAGTGAAAAAGGAAGATCAGGTCTCATCTCATCAAGTTGACCATCCTACATTGGATAATGACGAACAAGCAAATGTGGCATTGGTGGAAGTGGAAACTTTGGATGCAGAATTTTCAAAAGAAATCAGGGCAAGTAACGCGATTAGGGATCATATGGAGGAGTCTGTAACTAAAAGGCATCCTTTTCGTACAAGAGTTGCAGCGATTAGAGATTTTCCACGTTTATGTGGACGCAATGCTCCCCTTCTTACTAATGACGAGTGTGTAAAGGAGCTCTCTTCTTTGAATAAAAGGAGAGTGGGTCAAACTGATGTAAAAGAAGTGGATAGTAACAAGAGAAAACTGGCTAACATCGTTCAAGCTGACTCTGAAGGGACTGCTACACAGAGAGTTAAGAAGATGGATGTAGGTGAACCATCTTCTGATATGAGATTGACACTGGACAACACAAGAGAAAAAAAGAACACTCAACTTTCTGAAAAATATAATCACCATCAGGTTAACATAAATCCAAAGCCAATGGTTAAAAAGGAAAACACTAACACTGTACAGGCCGAGGAAACATCAGGCAGGAAAATAATGCTAGGTTTGATGTCTAAATCAGAATGTCATGGGAGATCTGATATCAGTTCCCTCAAATTTAAACCAGCGTCAATAGGTGGCACAGATGAAAGCAAGGGAAAGAAAGTTGATTTTTATGCCCGGGTAGACAGGTCTAAAACTGCTGTCAAGACGAAACATGTACCGGATCATTCTGAGCACGTGCAGTTGAAAAAGAAATCTAATTCTGATGACATGGGTGAATTAGTAAGACGGGCAAATAATTCTCTAGACCCTAATAAGAAACACAAAAACTTTCAAAGCGTCCCAAAATCACATGGTGTAAATGTTCCTCCTCTTGGTCGTGAGAATGACTCAATCGCCCGGAATAAAGTGAAGAATGCATTGCGCCTGTTCCAAGCTGTTTCTAGAAGTCTTTCGCAGGAAGCGGAAGCAAAAGCAAAGTCAAACGAGAAAGAAAGAAGGAGGTTTGATTTACAAGCTGCGAAAATACTTAAGGAGAAAGGGAGCTATGTTAATGAAGGGGATAAGATCTTGGGACCTGTCCCCGGGGTTGAAGTCGGTGATAAATTTCAATACAGAATAGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTGAAGCACAGAAATAAAATCCTTGCAACTAGTATTGTTGCGTCAGGGGGCTATTATGATGAATTAGATAATACAGATGTTTTGATATATACAGGGCAGGGGGGAAATGTGATGAGCAATGATAAAGACCCAGAAGATCAGAAGCTTGAAAGGGGCAATCTTGCTTTGAAGAACAGCAGCGAGGAAAAGAATCCTGTTAGGGTGATACGGGGTTCGGACTCAATGGATGGAAAATACAAGATATATGTTTATGATGGGCTTTATCTAGTTGAGTCATGTTGGCAGGAAATGGGGTCACATGGCAAGCTGGTTTATAAGTTTCGCATGCGGAAAATCCCAGGTCAACCAAAGCTTGCCTTGAAGGAGTGA 2163 0.4124 MNSEPPRGMVESMSLFNGHSEQELGIPLMENGGSSILARPMVKSYAVSAFRDFPEACGPFGSADGTSVEDKSEECSGGEAVSPNLEDDSQYSEVDQNLFDTETLEQTSDYSLKKEDLVVLSDQVDGDTLANNEAAKVALVDMETSDMEFATEVKKEDHMVSSHQVDQPTLDNAEQANVTLADMETLDAEFATGDMEFATEVKKEDQVSSHQVDHPTLDNDEQANVALVEVETLDAEFSKEIRASNAIRDHMEESVTKRHPFRTRVAAIRDFPRLCGRNAPLLTNDECVKELSSLNKRRVGQTDVKEVDSNKRKLANIVQADSEGTATQRVKKMDVGEPSSDMRLTLDNTREKKNTQLSEKYNHHQVNINPKPMVKKENTNTVQAEETSGRKIMLGLMSKSECHGRSDISSLKFKPASIGGTDESKGKKVDFYARVDRSKTAVKTKHVPDHSEHVQLKKKSNSDDMGELVRRANNSLDPNKKHKNFQSVPKSHGVNVPPLGRENDSIARNKVKNALRLFQAVSRSLSQEAEAKAKSNEKERRRFDLQAAKILKEKGSYVNEGDKILGPVPGVEVGDKFQYRIELNIIGLHRQIQGGIDYVKHRNKILATSIVASGGYYDELDNTDVLIYTGQGGNVMSNDKDPEDQKLERGNLALKNSSEEKNPVRVIRGSDSMDGKYKIYVYDGLYLVESCWQEMGSHGKLVYKFRMRKIPGQPKLALKE 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00583 720 SUPERFAMILY PUA domain-like 550 717 IPR015947 -
Trre9g00583 720 MobiDBLite consensus disorder prediction 474 503 - -
Trre9g00583 720 Pfam SAD/SRA domain 565 713 IPR003105 -
Trre9g00583 720 ProSiteProfiles YDG domain profile. 566 709 IPR003105 -
Trre9g00583 720 MobiDBLite consensus disorder prediction 64 92 - -
Trre9g00583 720 Coils Coil 715 720 - -
Trre9g00583 720 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 362 715 - -
Trre9g00583 720 SMART G9a_1 561 713 IPR003105 -
Trre9g00583 720 Gene3D - 547 720 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00583 Trre-Chr9 4183258 4185914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00583 484 714 Su(var)3-9 homologs AT5G04940 42.128 9.07e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00583 K11420 - tpra:123908193 748.814