Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00582 ATGGGTAAACATGGACCTTGCCATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAACGGACCACCAGAGAAGCCAATACTATGCAATGCATGCGGTTCTCGGTGGAGGACAAAGGGAACACTTGCGAATTATACACCTTTACATGCTCGGGCTGAAACTGATGATTTTGATGATCAAAGGGCTTCCAGGGTAAAGAGCATATCATTAAATAAGAACAAAGAAGTGAAATCGCTCAAACGGAAGCAGAACCATGATAATGTAGCATCTGGTGGTCGGCTTGCATATGATTACAACCAGGGATTCCAAAAGGCTGTTGACGAAGATATAAGCAATCGATCAAGTTCGGGATCAGCCTTGTCTAACTCAGAAAGCTGCGCACAATTTGGCGGCACAGATGCTAGTGATCTGACAGGACCTGCTCAATCAGTGGTCTGGGATACCACGGTGCCTTCGAAAAAGAGGACATGTGTTGGTCGTTCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACGATTCTTCACGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTACGAAAGTGAAGCACCAATGGTTTCTGTTGAGATAGGACACGGAAGTGTTCTCATTAGGCATCCTAGCTATGTAGCTCGTGATGAAGAGTCCGAGGCTAGCTCTCTTTCATTTGAAAATAGACAATATCTGATGAGTGAGGCATATTCTTATTCTGGTGCCGTTCTTACGCATTATGGTTCCAGTCGCACGAACTTCTCATCTCAGGGAGCTGAAAAGGCCAGGAACTCGGCTGTCCAGGGAATGAAGCAGGAGCAAGATGTGGTAAACTATGAAGAGTTTTCGAGGAACTTGTCAAATGAAGAGCAGCAGCAATTGATGAAGTTTCTTCCTGCGGTTGATACTGCTAAACTTCCTGATAGCCTTAATGTCATGTTCGACAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGTGGAAGGTGTCTTTGATATCTCTTTGTCGGGGGCAAAACCTGAAGACTGCAAAACTTTGAAAAGATATGCACTTTCTAATTTGTCAAAGTCGAAATGGGTGGAACACTATCATTTTCTCAAGAGATGTAAAAATAGAGCTGACAAATCTGATACTCCGGGATCTACAGCATCGACCAATTTTGCAAACGCAAAGAGAAAGCGTGATAGCAGAATTCAGAACTTTTCAGAGGTGAAGACAATAATGAGGAGTCCCAAAAGAATTATCACAAAGACTAGTTATGAAGGAAAACTTGTAGATGACGGCACTTGCTATAATCCAAAAAGCCTATTTCCTTTGCCTCCTGATGCTAGCTCACACTTGCTAGATTCTTTTAACTTCGTCGAGGAAAGTTCTGATCAGGATTTGCTGTTAGACGTGCCGTCTAATAACTCTTTTCCACAGGCAGAACTCTTGCACCCAAATTTAAGCTATGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGCATACTCACATCTTGTGAACCATTAA 1536 0.4284 MGKHGPCHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQRASRVKSISLNKNKEVKSLKRKQNHDNVASGGRLAYDYNQGFQKAVDEDISNRSSSGSALSNSESCAQFGGTDASDLTGPAQSVVWDTTVPSKKRTCVGRSKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLYESEAPMVSVEIGHGSVLIRHPSYVARDEESEASSLSFENRQYLMSEAYSYSGAVLTHYGSSRTNFSSQGAEKARNSAVQGMKQEQDVVNYEEFSRNLSNEEQQQLMKFLPAVDTAKLPDSLNVMFDSSQFKENLTYFQQLLVEGVFDISLSGAKPEDCKTLKRYALSNLSKSKWVEHYHFLKRCKNRADKSDTPGSTASTNFANAKRKRDSRIQNFSEVKTIMRSPKRIITKTSYEGKLVDDGTCYNPKSLFPLPPDASSHLLDSFNFVEESSDQDLLLDVPSNNSFPQAELLHPNLSYGAQASTSSSSAYSHLVNH 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00582 511 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Trre9g00582 511 Gene3D - 2 85 IPR013088 GO:0006355|GO:0008270
Trre9g00582 511 PANTHER OSJNBB0038F03.10 PROTEIN 1 509 IPR044589 -
Trre9g00582 511 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Trre9g00582 511 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Trre9g00582 511 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 268 381 IPR044867 -
Trre9g00582 511 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Trre9g00582 511 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Trre9g00582 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00582 Trre-Chr9 4167388 4171414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00582 1 488 C2C2-Gata Transcription Factor Family AT4G17570 51.845 1.18e-147 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre9g00582 GATA 4.7e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00582 - - gmx:100798504 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00582 9 4167388 4171414 Trre15g03436 15 40558589 40563369 PCT