Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00581 ATGGGTAAACATGGACCTTGCCATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAACGGACCACCAGAGAAGCCAATACTATGCAATGCATGCGGTTCTCGGTGGAGGACAAAGGGAACACTTGCGAATTATACACCTTTACATGCTCGGGCTGAAACTGATGATTTTGATGATCAAAGGGCTTCCAGGGTAAAGAGCATATCATTAAATAAGAACAAAGAAGTGAAATCGCTCAAACGGAAGCAGAACCATGATAATGTAGCATCTGGTGGTCGGCTTGCATATGATTACAACCAGGGATTCCAAAAGGCTGTTGACGAAGATATAAGCAATCGATCAAGTTCGGGATCAGCCTTGTCTAACTCAGAAAGCTGCGCACAATTTGGCGGCACAGATGCTAGTGATCTGACAGGACCTGCTCAATCAGTGGTCTGGGATACCACGGTGCCTTCGAAAAAGAGGACATGTGTTGGTCGTTCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACGATTCTTCACGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTACGAAAGTGAAGCACCAATGGTTTCTGTTGAGATAGGACACGGAAGTGTTCTCATTAGGCATCCTAGCTATGTAGCTCGTGATGAAGAGTCCGAGGCTAGCTCTCTTTCATTTGAAAATAGACAATATCTGATGAGTGAGGCATATTCTTATTCTGGTGCCGTTCTTACGCATTATGGTTCCAGTCGCACGAACTTCTCATCTCAGGGAGCTGAAAAGGCCAGGAACTCGGCTGTCCAGGGAATGAAGCAGGAGCAAGTTAAAAGTGACAAGTCTCAGATTGAACGAGTACAAATCCTTGGAAGTCATGATTCACCACTGAGCTCAATAGATTTAAATGATGTGGTAAACTATGAAGAGTTTTCGAGGAACTTGTCAAATGAAGAGCAGCAGCAATTGATGAAGTTTCTTCCTGCGGTTGATACTGCTAAACTTCCTGATAGCCTTAATGTCATGTTCGACAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGTGGAAGGTGTCTTTGATATCTCTTTGTCGGGGGCAAAACCTGAAGACTGCAAAACTTTGAAAAGATATGCACTTTCTAATTTGTCAAAGTCGAAATGGGTGGAACACTATCATTTTCTCAAGAGATGTAAAAATAGAGCTGACAAATCTGATACTCCGGGATCTACAGCATCGACCAATTTTGCAAACGCAAAGAGAAAGCGTGATAGCAGAATTCAGAACTTTTCAGAGGTGAAGACAATAATGAGGAGTCCCAAAAGAATTATCACAAAGACTAGTTATGAAGGAAAACTTGTAGATGACGGCACTTGCTATAATCCAAAAAGCCTATTTCCTTTGCCTCCTGATGCTAGCTCACACTTGCTAGATTCTTTTAACTTCGTCGAGGAAAGTTCTGATCAGGATTTGCTGTTAGACGTGCCGTCTAATAACTCTTTTCCACAGGCAGAACTCTTGCACCCAAATTTAAGCTATGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGCATACTCACATCTTGTGAACCATTAA 1617 0.4249 MGKHGPCHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQRASRVKSISLNKNKEVKSLKRKQNHDNVASGGRLAYDYNQGFQKAVDEDISNRSSSGSALSNSESCAQFGGTDASDLTGPAQSVVWDTTVPSKKRTCVGRSKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLYESEAPMVSVEIGHGSVLIRHPSYVARDEESEASSLSFENRQYLMSEAYSYSGAVLTHYGSSRTNFSSQGAEKARNSAVQGMKQEQVKSDKSQIERVQILGSHDSPLSSIDLNDVVNYEEFSRNLSNEEQQQLMKFLPAVDTAKLPDSLNVMFDSSQFKENLTYFQQLLVEGVFDISLSGAKPEDCKTLKRYALSNLSKSKWVEHYHFLKRCKNRADKSDTPGSTASTNFANAKRKRDSRIQNFSEVKTIMRSPKRIITKTSYEGKLVDDGTCYNPKSLFPLPPDASSHLLDSFNFVEESSDQDLLLDVPSNNSFPQAELLHPNLSYGAQASTSSSSAYSHLVNH 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00581 538 Gene3D - 4 87 IPR013088 GO:0006355|GO:0008270
Trre9g00581 538 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Trre9g00581 538 Gene3D - 286 388 IPR038108 -
Trre9g00581 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 408 IPR044867 -
Trre9g00581 538 PANTHER OSJNBB0038F03.10 PROTEIN 1 536 IPR044589 -
Trre9g00581 538 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Trre9g00581 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Trre9g00581 538 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Trre9g00581 538 Pfam Asx homology domain 283 368 IPR028020 -
Trre9g00581 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Trre9g00581 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00581 Trre-Chr9 4167388 4171414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00581 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.373 5.98e-165 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre9g00581 ASXH 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00581 - - gmx:100798504 831.247