Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00565 ATGGCTTCCTCCTATACCCTTTACATAATTTCCATTCTTTTTCTTCAACTTATATTAGTCTTTGGAAACGTTACTCGAAGTTCTACACTCACTACTACCCACAACAACAACAATCCATGGCTGTCACAATCTGGTGAATTTGCTTTTGGATTCCAACAACTTAAAACCACAACAAACCTCTTCATGCTTGCAATTTGGTACAACAAAATACCTGAAAAAACCATTGTTTGGAGTGCAAAAGACACAAACAACAATAACCTCGTACAAGCACCGACAGGATCACAGATTCAGTTAACATCAGGTGGACTCACTTTGACAACATCACAAGGTGAATCTATTTGGACAGCACAACCAAATGAACCTGTTTCCTATGGAAACATGCTTGACAATGGAAACTTTGTTCTTGCAAACAAGAATTCTACTATTGTTTGGGAAAGTTTCAAGTTTCCTACAGATACCCTTTTGCCTAATCAATCTCTTGAGTTAAATGGAACCTTAACTTCAAGATTATCAGAGACTAATTACACTAGTGGAAGGTTTCAACTTTATTTTAATGATGATGATGATGATAATAATCATGTTTTGTTAAGTCCACTTGCATGGCCTACTCAATTACGTTACAAATTTTACTATAGAATTGATGCTCCTAATAACTCTGCTTCTTCAAGTTTAGTTTTTGATGAATCAGGAGAAATTTATGTTGAAACAAATAATAATGGTACTAGAGTGAAACCTGAGGGTACACAATGGAAGAATTTAGTTCTTGATCCTAAGTTGTATTATTATAGAGCAACACTAGATTATCATGGAGTTTTCACACAATACTCTCATCCAAGAGATACTAAAGCACAACAAGAATGGACTATTATGAGGTATGTTCCTGATAACATTTGCATTGCTATATTCAATGAAAAGGGTAGTGGAACTTGTGGATATAATAGCTATTGTTCCATGGAAAATCAAAGGCCTACTTGTAAATGTCCTTATGGTTATTCACTGATAGATTCGAGTAATCAATTTGGGGGGTGTAAACTCAATTTCACATTTGCTTGTGGAGCTGATAATGGTGAAGGATTGAATGTGAAGCAAGAAGATTTATATGAGTTCACTGTTCTTAAAGATGTGGATTGGCCTTTATCAGATTATGAAGAGATGCAGCCTTATGGTCAACAGGATTGTCAACAATCTTGTTTGCATGATTGCATGTGTGCTGTTGCTGTTTTCAATAACAAAACTTGTTGGAAGAAAAGATTGCCTCTTGCTAATGGAAGAGCACAAAGTGGTGGTCAATTAGTACTTGTGAAAACAAGAGTTTCTCCTCTTGGTAGCCTTGGTCGTAGTCCTTCGAGTTCACCTGATTCGAATAAAGACGATGGAGTTAAGCCGATTCTTCGTGGTTTGCTTATTGGTTCAACTGTCTTCAATAGCATACTCTTGGCTTTGGTTGTTTTTGTGACTTTGTGGAAACCGAAAAGGGTTGTCCAAGCTGCAACTCTAGTGGAAACAAATTTATGTTCGTTTAGTTATGAGGCGTTAAAAGAAGCTACACGGGGTTTTAGTGAAGAACTAGGTAGAGGTTCCTTTGGGATTGTTTATAAAGGTGAATTAAAAGCAGCAGCATCTTGTAATGCTGTTGCTGTTAAGAGATTGGATCGGTTAGCACAAGATCGTGAGAAGGAATTTAAGACCGAGTTGAGAGCTATTGGTAAAACCTGCCACAAAAACTTGGTAAGATTGATTGGATATTGTGATGAAGGACTGCATAGAATGTTGGTGTATGAGTTCATGAGCAATGGTAGTCTAGCAGATATCTTGTTTGGACAAACCAAACCGATTTGGAATCAAAGGATTGGATTTGCTCTGGGGATTGCAAGAGGATTGGTGTATTTACATGAAGAGTGTGATGCTCCCATCATTCATTGTGACATAAAGCCTCAAAATATACTCATAGACGAGTACTTCACGGCAAAGATATCTGACTTTGGATTGGCCAAGTTGTTGTTGGCTGATCAAAGTAGAACAAATACAATGATCCGAGGAACGCGAGGATATGTAGCTCCTGAATGGTTCAAGAATGTTCCCGTGACAGCTAAAGTGGATGTTTACAGCTTCGGTTCCATGTTGTTAGAAATCATTTGCTGCAGAAAAAGTGTGGTGCTGATGGAGTCGGGGCAAGAAGAGAAGGCAATTTTGACAGATTGGGTCTGTGATTGCTACATGGAAGGGAGAATAGATGTTCTTGTGGAGAATGATCAAGAAGCCTTGGAAGACATTGGCAGGTTAGAAAAGTGGATAAAGATAGCAATTTGGTGCATTCAAGAGCATCCTGAAATGAGACCAACAATGAGGATGGTCATGCAAATGCTAGAAGGTGTGGTTCAAGTCCCTAATCCACCATCGCCATTTTCCTTCAGTTCGATTTCTTGA 2427 0.3815 MASSYTLYIISILFLQLILVFGNVTRSSTLTTTHNNNNPWLSQSGEFAFGFQQLKTTTNLFMLAIWYNKIPEKTIVWSAKDTNNNNLVQAPTGSQIQLTSGGLTLTTSQGESIWTAQPNEPVSYGNMLDNGNFVLANKNSTIVWESFKFPTDTLLPNQSLELNGTLTSRLSETNYTSGRFQLYFNDDDDDNNHVLLSPLAWPTQLRYKFYYRIDAPNNSASSSLVFDESGEIYVETNNNGTRVKPEGTQWKNLVLDPKLYYYRATLDYHGVFTQYSHPRDTKAQQEWTIMRYVPDNICIAIFNEKGSGTCGYNSYCSMENQRPTCKCPYGYSLIDSSNQFGGCKLNFTFACGADNGEGLNVKQEDLYEFTVLKDVDWPLSDYEEMQPYGQQDCQQSCLHDCMCAVAVFNNKTCWKKRLPLANGRAQSGGQLVLVKTRVSPLGSLGRSPSSSPDSNKDDGVKPILRGLLIGSTVFNSILLALVVFVTLWKPKRVVQAATLVETNLCSFSYEALKEATRGFSEELGRGSFGIVYKGELKAAASCNAVAVKRLDRLAQDREKEFKTELRAIGKTCHKNLVRLIGYCDEGLHRMLVYEFMSNGSLADILFGQTKPIWNQRIGFALGIARGLVYLHEECDAPIIHCDIKPQNILIDEYFTAKISDFGLAKLLLADQSRTNTMIRGTRGYVAPEWFKNVPVTAKVDVYSFGSMLLEIICCRKSVVLMESGQEEKAILTDWVCDCYMEGRIDVLVENDQEALEDIGRLEKWIKIAIWCIQEHPEMRPTMRMVMQMLEGVVQVPNPPSPFSFSSIS 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00565 808 PIRSF SRK 1 808 IPR024171 GO:0004674
Trre9g00565 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 20 148 - -
Trre9g00565 808 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Trre9g00565 808 ProSiteProfiles Protein kinase domain profile. 517 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00565 808 ProSitePatterns Protein kinases ATP-binding region signature. 523 548 IPR017441 GO:0005524
Trre9g00565 808 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 30 801 - -
Trre9g00565 808 SMART serkin_6 517 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g00565 808 Gene3D - 25 148 IPR036426 -
Trre9g00565 808 Gene3D Phosphorylase Kinase; domain 1 484 595 - -
Trre9g00565 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 797 - -
Trre9g00565 808 SUPERFAMILY Protein kinase-like (PK-like) 501 790 IPR011009 -
Trre9g00565 808 SMART blect_4 31 150 IPR001480 -
Trre9g00565 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 203 IPR036426 -
Trre9g00565 808 Pfam D-mannose binding lectin 74 164 IPR001480 -
Trre9g00565 808 FunFam S-receptor-like serine/threonine-protein kinase 489 595 - -
Trre9g00565 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Trre9g00565 808 Pfam PAN-like domain 368 414 IPR003609 -
Trre9g00565 808 Gene3D Transferase(Phosphotransferase) domain 1 596 795 - -
Trre9g00565 808 Gene3D - 149 284 IPR036426 -
Trre9g00565 808 Pfam Protein kinase domain 520 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00565 Trre-Chr9 4080818 4083244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00565 470 794 Receptor kinase-like Gene Family AT5G45780 41.667 1.60e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre9g00565 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00565 - - lja:Lj2g3v1989170.1 1087.79