Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00558 ATGGTGCTTTACGGTGTACTTCGTGATGCCGTTAATGTTGGGTGGGTCCCATCTCTTGTTGCAGGCTCACCGGAGAGTTTTTCTTCGTCGTGTTTTATGCCGGCGGGGATTGTTAAATCGGAGCCGGAAGTTGAGAGTTTGTCTGAGATGATTGTTTCGACTCCGGTGGATGTGCCGGCGAAGGGGAAGCATTACAGGGGAGTTAGACGGCGGCCGTGGGGGAAATTTGCGGCGGAGATACGTGATCCGGCTAAAAATGGGGCGCGGGTTTGGCTTGGAACATTTGAAACGGCTGAGGATGCAGCTTTGGCTTATGATCGAGCTGCTTATAGGATGCGTGGTTCAAAGGCTATGTTGAATTTTCCACTTCGGGTTAATTCCGGTGAGCCTGACCCGGTTAGAGTGCGTTCGAAACGGTGTTCTTCGTCGTCGGAGGAGTGTGGATTGTTGGTGAAACGGAAGAAGAAGGTGGTGGGGGCAACGGTGGATTGA 492 0.5244 MVLYGVLRDAVNVGWVPSLVAGSPESFSSSCFMPAGIVKSEPEVESLSEMIVSTPVDVPAKGKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKAMLNFPLRVNSGEPDPVRVRSKRCSSSSEECGLLVKRKKKVVGATVD 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00558 163 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Trre9g00558 163 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Trre9g00558 163 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Trre9g00558 163 ProSiteProfiles AP2/ERF domain profile. 64 122 IPR001471 GO:0003700|GO:0006355
Trre9g00558 163 SUPERFAMILY DNA-binding domain 64 124 IPR016177 GO:0003677
Trre9g00558 163 SMART rav1_2 64 128 IPR001471 GO:0003700|GO:0006355
Trre9g00558 163 FunFam Ethylene-responsive transcription factor 2 63 123 - -
Trre9g00558 163 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Trre9g00558 163 Gene3D AP2/ERF domain 63 125 IPR036955 GO:0003700|GO:0006355
Trre9g00558 163 PANTHER DNA-BINDING DOMAIN 59 139 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00558 Trre-Chr9 4040310 4040801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00558 1 163 AP2-EREBP Transcription Factor Family AT4G17500 56.497 1.43e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g00558 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00558 K09286 - gmx:100819649 216.853