Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00556 ATGAATTCACTCTTCTTTCTCACCCTCTTCTTGTTTTTCATCTTCCAAACCTCTGCTACCTGCAATGATGACATTCACTATCCATTTCACATAAAGGGTCAACAACAAGAGTATGATACTACTCTTTCTGGTTTTGAGCTTCTTCACAAAAACAACATCACCACCATCCATTTTCCATCATATGGTGATTTAGTAGTCAAATCTATTTCCTATGACACCAAAAAGATTGATCTTCTTGATCCAAAAAACTGTGTCCATAGAGTCTTTCTCAACCTTAACCTCACCCTTACACCATTCCAATACTACTATGTTCTTAAAAACTTTACATACATGAATTGTTCCACTACACTTTTACACACAAATTTCAGTGAGATTCCATGTTTAAGTGGTTCAAGTTATCATGTTTACACAGTTGACCCTGAAGTTCATATTCCTAGTTCATGTAAAAAAGTCAAAACCGTTGCTATTCCTTTCAAATATAGCCCTTATATTTCAGACAATAGTCTTGGTCTTAGATTAACATGGAACTTGCGTGAATCTGAAGAAACCAATGAAGGAAACAAGACTAGAGATTCCCACACAACACGTAATACAGTTATTGGCCTAAGCATGTGTTTATTGGTGATAGCAGCACTTGTAAGCATAAAGGTTTATTTGTCCACAAGGAATTTCCATAAGAAAGAAGAGCAATTGTTGCATAGCGTGGCAAATTTCTAG 717 0.357 MNSLFFLTLFLFFIFQTSATCNDDIHYPFHIKGQQQEYDTTLSGFELLHKNNITTIHFPSYGDLVVKSISYDTKKIDLLDPKNCVHRVFLNLNLTLTPFQYYYVLKNFTYMNCSTTLLHTNFSEIPCLSGSSYHVYTVDPEVHIPSSCKKVKTVAIPFKYSPYISDNSLGLRLTWNLRESEETNEGNKTRDSHTTRNTVIGLSMCLLVIAALVSIKVYLSTRNFHKKEEQLLHSVANF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00556 238 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 196 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00556 Trre-Chr9 4021517 4022679 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00556 26 190 C3H Transcription Factor Family AT2G25410 29.885 3.95e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00556 - - lja:Lj2g3v1989230.1 306.605