Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00551 ATGGAGCGTCTCTCTGCCAAATATCATGCAGACACTTACCATCTGATTGCCAAAAATTGTAACCATTTTACGGATGAAGTTTGCCAACAACTAACAGGAAATCCTATTCCTGGACGGGTTAATCGACTTGCTCGTGTAGGTTCCTTTTGCAATTGTCTACTGCCGGAAAGCATCCAGGTTGCTGCAGTTAGACATGTCCCTGAACGTCTTTCATTTGCTGATGATGACGGATCAGATTCCGATGGCTTTTCTCTGTCTGGCGAGAGTGAAGAGGAGGAGCCCAATCAGCGTCTACTAAATGCACCAAACGGCGATGTTGCCTTTTTAAAGGAAAAACCAGGTCAACAAGGGTATGATACTACCCTCTCTAGTTTTGAGCTTCTTCACAAAGACAACATCACCACCATCCATTTTCCATCATATGGTGATTTAGTAGTCAAGTCAATTTCCTATGACACCAAAAAGATTGATCTTCTTGATCCAAAAAACTGTGTCCATAGAGTCTTTCTCAACCTTAACCTCACCCTCACACCATTCCAATACTACTATGTTCTCAAAAACTTTACATACATGAATTGTTCCACTACACTTTTACACACAAATTTCACTGAGATTCCATGTTTAAGTGGCTCAAGTTATCATGTATACACAGTTGACCCTGAAGTTCATATTCCTAGTTCATGTAAAAAAGTCAAAACCGTTGCCATTCCTTTCAAATATAGCCCTTATATTTCAGACAATAGTCTTGGTCTTAGATTAACATGGAACTTGCTTGAATCTGAAGAAACCAATGAAGGAAACAAGACTAGAGATTCCCACACAACACGTAATACAGTTATTGGCCTAAGCATGTGTTTATTGGTGATAGCAACACTTGTAAGCATAAAGGTTTATTTGTCCACAAGGAATTTCCATAAGAAAGAAGAGCAATTGTTGCATAGCGTGGCAAATTTCTAG 957 0.395 MERLSAKYHADTYHLIAKNCNHFTDEVCQQLTGNPIPGRVNRLARVGSFCNCLLPESIQVAAVRHVPERLSFADDDGSDSDGFSLSGESEEEEPNQRLLNAPNGDVAFLKEKPGQQGYDTTLSSFELLHKDNITTIHFPSYGDLVVKSISYDTKKIDLLDPKNCVHRVFLNLNLTLTPFQYYYVLKNFTYMNCSTTLLHTNFTEIPCLSGSSYHVYTVDPEVHIPSSCKKVKTVAIPFKYSPYISDNSLGLRLTWNLLESEETNEGNKTRDSHTTRNTVIGLSMCLLVIATLVSIKVYLSTRNFHKKEEQLLHSVANF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00551 318 ProSiteProfiles PPPDE domain profile. 1 58 IPR008580 GO:0008233
Trre9g00551 318 MobiDBLite consensus disorder prediction 72 98 - -
Trre9g00551 318 Gene3D PPPDE domains 1 67 IPR042266 -
Trre9g00551 318 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 119 274 IPR046948 -
Trre9g00551 318 Pfam PPPDE putative peptidase domain 1 56 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00551 Trre-Chr9 3994677 3998916 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00551 112 270 C3H Transcription Factor Family AT2G25410 30.357 6.65e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00551 - - lja:Lj2g3v1989230.1 278.87