Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00548 ATGATGGTTGAAAAGGAAGATTTGGGTTTGAGCCTAAGCTTGAACTTACCTCAAAATCCACCACCAAACCCTCAATACCTTAATCTTATGTCTTCTTCAACTCATTCATCTTCTCCTTCTAGCTACAATCTCCAAAAACCATCTTGGAACGATGCTTTCACTTCTTCAGATCGGGATTCGGAAACATGCAGAGGAGAAGAACGATCTCTACTCCTCCGAGGAATCGATGTGAATCGGTTACCTTCCGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCTCCAAACAGCACAGTTTCAAGTGTGAGTGGTAAACGAAGCGAAAGGGAAGTTACTGGTGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGATGCTGAAACATCAAGGAAAAAACTTAGACTCACTAAAGACCAATCAATTATTCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAGTTGGCACTTGCAAAACAATTGGGACTTCGTGCTAGACAAGTTGAAGTTTGGTTTCAAAATCGTAGAGCAAGGACTAAGTTGAAGCAAACAGAGGTAGATTGTGAGTTTTTGAAACGGTGTTGTGAGAATCTAACGGATGAAAATAGGAGGTTGCAAAAGGAAGTACAAGAGCTAAGAGCACTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCAACAACACTTACCATGTGCCCTTCTTGTGAGCGTGTAGCTGTTCCAACATCTGCGGTTGATGCTGCCACGCGTCGTCATCCTATGGTTCCAACACACCCTCGTGCATTTCCAGTGGGCCCATGGGCCACAGCTGCTCCAATACAGCATAGGCCCTTTGATCCAATCAGGCCCAGATCTTAA 894 0.4318 MMVEKEDLGLSLSLNLPQNPPPNPQYLNLMSSSTHSSSPSSYNLQKPSWNDAFTSSDRDSETCRGEERSLLLRGIDVNRLPSGADCEEEAGVSSPNSTVSSVSGKRSEREVTGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPTSAVDAATRRHPMVPTHPRAFPVGPWATAAPIQHRPFDPIRPRS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00548 297 PRINTS Lambda-repressor HTH signature 172 188 IPR000047 GO:0003677
Trre9g00548 297 PRINTS Lambda-repressor HTH signature 163 172 IPR000047 GO:0003677
Trre9g00548 297 MobiDBLite consensus disorder prediction 25 56 - -
Trre9g00548 297 MobiDBLite consensus disorder prediction 91 106 - -
Trre9g00548 297 MobiDBLite consensus disorder prediction 1 61 - -
Trre9g00548 297 SMART HOX_1 134 196 IPR001356 GO:0003677
Trre9g00548 297 MobiDBLite consensus disorder prediction 85 135 - -
Trre9g00548 297 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Trre9g00548 297 FunFam Homeobox-leucine zipper protein 18 122 197 - -
Trre9g00548 297 Coils Coil 191 228 - -
Trre9g00548 297 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Trre9g00548 297 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Trre9g00548 297 Gene3D - 140 190 - -
Trre9g00548 297 CDD homeodomain 136 193 IPR001356 GO:0003677
Trre9g00548 297 SUPERFAMILY Homeodomain-like 127 193 IPR009057 -
Trre9g00548 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 47 259 - -
Trre9g00548 297 MobiDBLite consensus disorder prediction 107 135 - -
Trre9g00548 297 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Trre9g00548 297 Pfam HD-ZIP protein N terminus 2 110 IPR006712 GO:0005634
Trre9g00548 297 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00548 Trre-Chr9 3958765 3960231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00548 1 297 Homeobox Transcription Factor Family AT4G16780 64.570 8.65e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre9g00548 HD-ZIP_N 3.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00548 K09338 - gmx:100813367 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00548 9 3958765 3960231 Trre15g03383 15 39419543 39421031 PCT