Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00544 ATGGAACAAGTTTCTGTCCCAATAGACAACGAAATTGAACTAACCACTTCAATCTCTTCCTCCAATGAAAATAACAAAACCAAAGCCAAAAGTGATAATAATGGAAAACACCCTTTGTATCGTGGAGTAAGAATGCGTCATTGGGGTAAGTGGGTTTCTGAAATTAGAGAGCCCAAGAAAAAATCAAGAATTTGGCTAGGTACTTTTTCAACACCCGAAATGGCAGCTCGGGCCCATGATGTTGCGGCCCAAGCCGTCAAAGGAAGCTCGGCTTACCTTAATTTCCCCGAATTAGCTGAACACCTTCCACGCCCCGCCACCAATTCTCCGAAGGACATTCAAGCCGCCGCCGCCAAAGCAGCTTCGATGGACTTTCCTCATCAAGCCCAGGCCCAAGCCCACGACTTACAAGAATCGTCAAATTCATCTTTAACTGACGAGGATGCCGCGTTGTATGACCTGCCGGATCTCTTACTCGATAAAAACAACCATTCAACAAGTGAATTATATTATTCTTCAATGCCGTGGCTTGTGGCTGGAACTGAATATTCAAACTCAGGTTATGGGCTGGATGAGCCTTTACCGTGGGAGCATTATTAA 600 0.4517 MEQVSVPIDNEIELTTSISSSNENNKTKAKSDNNGKHPLYRGVRMRHWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAAQAVKGSSAYLNFPELAEHLPRPATNSPKDIQAAAAKAASMDFPHQAQAQAHDLQESSNSSLTDEDAALYDLPDLLLDKNNHSTSELYYSSMPWLVAGTEYSNSGYGLDEPLPWEHY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00544 199 MobiDBLite consensus disorder prediction 114 144 - -
Trre9g00544 199 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Trre9g00544 199 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Trre9g00544 199 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Trre9g00544 199 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Trre9g00544 199 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Trre9g00544 199 MobiDBLite consensus disorder prediction 1 39 - -
Trre9g00544 199 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Trre9g00544 199 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Trre9g00544 199 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Trre9g00544 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 160 - -
Trre9g00544 199 MobiDBLite consensus disorder prediction 1 28 - -
Trre9g00544 199 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00544 Trre-Chr9 3898909 3899508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00544 21 176 AP2-EREBP Transcription Factor Family AT4G16750 58.974 1.74e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g00544 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00544 - - cam:101496929 242.662