Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g00544 | ATGGAACAAGTTTCTGTCCCAATAGACAACGAAATTGAACTAACCACTTCAATCTCTTCCTCCAATGAAAATAACAAAACCAAAGCCAAAAGTGATAATAATGGAAAACACCCTTTGTATCGTGGAGTAAGAATGCGTCATTGGGGTAAGTGGGTTTCTGAAATTAGAGAGCCCAAGAAAAAATCAAGAATTTGGCTAGGTACTTTTTCAACACCCGAAATGGCAGCTCGGGCCCATGATGTTGCGGCCCAAGCCGTCAAAGGAAGCTCGGCTTACCTTAATTTCCCCGAATTAGCTGAACACCTTCCACGCCCCGCCACCAATTCTCCGAAGGACATTCAAGCCGCCGCCGCCAAAGCAGCTTCGATGGACTTTCCTCATCAAGCCCAGGCCCAAGCCCACGACTTACAAGAATCGTCAAATTCATCTTTAACTGACGAGGATGCCGCGTTGTATGACCTGCCGGATCTCTTACTCGATAAAAACAACCATTCAACAAGTGAATTATATTATTCTTCAATGCCGTGGCTTGTGGCTGGAACTGAATATTCAAACTCAGGTTATGGGCTGGATGAGCCTTTACCGTGGGAGCATTATTAA | 600 | 0.4517 | MEQVSVPIDNEIELTTSISSSNENNKTKAKSDNNGKHPLYRGVRMRHWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAAQAVKGSSAYLNFPELAEHLPRPATNSPKDIQAAAAKAASMDFPHQAQAQAHDLQESSNSSLTDEDAALYDLPDLLLDKNNHSTSELYYSSMPWLVAGTEYSNSGYGLDEPLPWEHY | 199 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g00544 | 199 | MobiDBLite | consensus disorder prediction | 114 | 144 | - | - | |
Trre9g00544 | 199 | SUPERFAMILY | DNA-binding domain | 39 | 97 | IPR016177 | GO:0003677 | |
Trre9g00544 | 199 | Gene3D | AP2/ERF domain | 39 | 97 | IPR036955 | GO:0003700|GO:0006355 | |
Trre9g00544 | 199 | ProSiteProfiles | AP2/ERF domain profile. | 39 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00544 | 199 | SMART | rav1_2 | 39 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00544 | 199 | CDD | AP2 | 38 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00544 | 199 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Trre9g00544 | 199 | FunFam | Ethylene-responsive transcription factor 2 | 38 | 97 | - | - | |
Trre9g00544 | 199 | PRINTS | Ethylene responsive element binding protein signature | 40 | 51 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00544 | 199 | PRINTS | Ethylene responsive element binding protein signature | 62 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g00544 | 199 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 20 | 160 | - | - | |
Trre9g00544 | 199 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Trre9g00544 | 199 | Pfam | AP2 domain | 38 | 88 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g00544 | Trre-Chr9 | 3898909 | 3899508 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g00544 | 21 | 176 | AP2-EREBP Transcription Factor Family | AT4G16750 | 58.974 | 1.74e-54 | 170 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Trre9g00544 | AP2 | 5.8e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g00544 | - | - | cam:101496929 | 242.662 |