Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00542 ATGTCAGGTGAAGAAGAGGTTGTTGCTGCAGTTGAGCCTGTTGCTGCTGGAATTCCAGGTGAACCAATGGACATCATGACTGCTGTACAGCTTGTGCTTAGAAAGTCACGTGCTTATGGCGGTCTTGCAAGAGGTCTTCATGAAGGTGCAAAAGCGATCGAGAAGCATGCTGCACAACTTTGTGTTTTAGCTGAAGATTGTGACCAACCTGATTATGTCAAACTGGTGAAAGCCCTTTGCGCCGAGCATAATGTTAGCTTGTTGACAGTTCCAAATGCTAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCAGAAGGTAAAGCTAGGAAGGTTACTGGTTGCTCTTGTGTGGTTGTCAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTTTGCAGCATGTGAAAGCTAATTGA 429 0.4499 MSGEEEVVAAVEPVAAGIPGEPMDIMTAVQLVLRKSRAYGGLARGLHEGAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00542 142 PANTHER 40S RIBOSOMAL PROTEIN S12 19 141 - -
Trre9g00542 142 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 28 121 IPR004038 -
Trre9g00542 142 SUPERFAMILY L30e-like 22 140 IPR029064 -
Trre9g00542 142 PRINTS Ribosomal protein S12E family signature 46 62 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre9g00542 142 PRINTS Ribosomal protein S12E family signature 87 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre9g00542 142 PRINTS Ribosomal protein S12E family signature 112 125 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre9g00542 142 PRINTS Ribosomal protein S12E family signature 32 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre9g00542 142 FunFam 40S ribosomal protein S12 8 142 - -
Trre9g00542 142 Gene3D - 4 142 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00542 Trre-Chr9 3879936 3880888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00542 18 142 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 73.600 2.96e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00542 K02951 - gmx:100500093 256.914