Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g00525 | ATGGAGAGGTACAAATGCAAGCTTTGCACAAGAATATTAGCCAGTAGCAAAGCATTGGGTGGACACATGAAGGCTCATTTTCATTTAGCAAACTTCCCTCTTCCTCCTCCTCCCTTCGAAGATGAGCGATCCGAGCGAAACCGAAAACTCACCTTTAGCCAAAACTCAGAACAAAAGAAACTCAAACAAAGTTTTTTAGATTCATATTCACCACTAACTGAAACTGAACCAGAAAAGGTTAGTTCAATTTATGATACTTCTCCTGAAGAAGAAGTTGCTATAACCCTCATGTTGCTATCAAGAGATAAATGGGAGAAGAAGAAGAACAATGTTGTTGACAAAGAAGCAGCACAAGAAGTTGAAAGATCAATGGGATTAATGGAAGAGATTAAGCTCAAAAAAGTTAGTGGGAAACAAAAATGTGACAAATGTGGGAATAGCTTTGGAAGTTCTAGAGCATTGGAAAGTCACAAAATCATTTGTCTTCAAAATGAAGCAAATCTGGTTGCAGCAACTAGTAATAGTGATCACAAAATATTCCAATGTATGATTTGTTTTAAGGTTTTTGGGTCTGGTCAAGCATTAGGTGGTCACAAGAGATCTCACTTTTATCCATCTTTGAAGAAAAAACTTTGTTTCTTCGATCTCAACTCGCCACCTTCACCCGAAGAAAACGGTCCTAGTGTTCTTTTTGATGCCTAG | 702 | 0.3789 | MERYKCKLCTRILASSKALGGHMKAHFHLANFPLPPPPFEDERSERNRKLTFSQNSEQKKLKQSFLDSYSPLTETEPEKVSSIYDTSPEEEVAITLMLLSRDKWEKKKNNVVDKEAAQEVERSMGLMEEIKLKKVSGKQKCDKCGNSFGSSRALESHKIICLQNEANLVAATSNSDHKIFQCMICFKVFGSGQALGGHKRSHFYPSLKKKLCFFDLNSPPSPEENGPSVLFDA | 233 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g00525 | 233 | Pfam | C2H2-type zinc finger | 3 | 26 | - | - | |
Trre9g00525 | 233 | Pfam | C2H2-type zinc finger | 180 | 202 | - | - | |
Trre9g00525 | 233 | Pfam | C2H2-type zinc finger | 140 | 158 | - | - | |
Trre9g00525 | 233 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 182 | 202 | IPR013087 | - | |
Trre9g00525 | 233 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 180 | 202 | IPR013087 | - | |
Trre9g00525 | 233 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
Trre9g00525 | 233 | SUPERFAMILY | beta-beta-alpha zinc fingers | 140 | 202 | IPR036236 | - | |
Trre9g00525 | 233 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 33 | IPR013087 | - | |
Trre9g00525 | 233 | Gene3D | Classic Zinc Finger | 136 | 202 | - | - | |
Trre9g00525 | 233 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 60 | IPR044303 | GO:0006355 | |
Trre9g00525 | 233 | SMART | c2h2final6 | 180 | 202 | IPR013087 | - | |
Trre9g00525 | 233 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
Trre9g00525 | 233 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g00525 | Trre-Chr9 | 3780536 | 3781237 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g00525 | 1 | 231 | C2H2 Transcription Factor Family | AT3G60580 | 33.447 | 8.99e-32 | 115 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre9g00525 | zf-C2H2_6 | 0.00023 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g00525 | - | - | tpra:123910253 | 339.732 |