Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00525 ATGGAGAGGTACAAATGCAAGCTTTGCACAAGAATATTAGCCAGTAGCAAAGCATTGGGTGGACACATGAAGGCTCATTTTCATTTAGCAAACTTCCCTCTTCCTCCTCCTCCCTTCGAAGATGAGCGATCCGAGCGAAACCGAAAACTCACCTTTAGCCAAAACTCAGAACAAAAGAAACTCAAACAAAGTTTTTTAGATTCATATTCACCACTAACTGAAACTGAACCAGAAAAGGTTAGTTCAATTTATGATACTTCTCCTGAAGAAGAAGTTGCTATAACCCTCATGTTGCTATCAAGAGATAAATGGGAGAAGAAGAAGAACAATGTTGTTGACAAAGAAGCAGCACAAGAAGTTGAAAGATCAATGGGATTAATGGAAGAGATTAAGCTCAAAAAAGTTAGTGGGAAACAAAAATGTGACAAATGTGGGAATAGCTTTGGAAGTTCTAGAGCATTGGAAAGTCACAAAATCATTTGTCTTCAAAATGAAGCAAATCTGGTTGCAGCAACTAGTAATAGTGATCACAAAATATTCCAATGTATGATTTGTTTTAAGGTTTTTGGGTCTGGTCAAGCATTAGGTGGTCACAAGAGATCTCACTTTTATCCATCTTTGAAGAAAAAACTTTGTTTCTTCGATCTCAACTCGCCACCTTCACCCGAAGAAAACGGTCCTAGTGTTCTTTTTGATGCCTAG 702 0.3789 MERYKCKLCTRILASSKALGGHMKAHFHLANFPLPPPPFEDERSERNRKLTFSQNSEQKKLKQSFLDSYSPLTETEPEKVSSIYDTSPEEEVAITLMLLSRDKWEKKKNNVVDKEAAQEVERSMGLMEEIKLKKVSGKQKCDKCGNSFGSSRALESHKIICLQNEANLVAATSNSDHKIFQCMICFKVFGSGQALGGHKRSHFYPSLKKKLCFFDLNSPPSPEENGPSVLFDA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00525 233 Pfam C2H2-type zinc finger 3 26 - -
Trre9g00525 233 Pfam C2H2-type zinc finger 180 202 - -
Trre9g00525 233 Pfam C2H2-type zinc finger 140 158 - -
Trre9g00525 233 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Trre9g00525 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 202 IPR013087 -
Trre9g00525 233 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Trre9g00525 233 SUPERFAMILY beta-beta-alpha zinc fingers 140 202 IPR036236 -
Trre9g00525 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 33 IPR013087 -
Trre9g00525 233 Gene3D Classic Zinc Finger 136 202 - -
Trre9g00525 233 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 60 IPR044303 GO:0006355
Trre9g00525 233 SMART c2h2final6 180 202 IPR013087 -
Trre9g00525 233 SMART c2h2final6 4 26 IPR013087 -
Trre9g00525 233 SMART c2h2final6 139 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00525 Trre-Chr9 3780536 3781237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00525 1 231 C2H2 Transcription Factor Family AT3G60580 33.447 8.99e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g00525 zf-C2H2_6 0.00023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00525 - - tpra:123910253 339.732