Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00521 ATGCAACATTCTATAATGGCTAAGACTACTCTTTTCTATTTGTTGCATTTGCTTTTGATTTTCACTTGCATGTTGTTAAATGCAGGAATTGTTACATTAGGTGCACGCCATCATCACAATGCTACCTTCAACTATTTATCTTCTTCAAACTCTTCCGAGCACCACTGGATCGGACCTGTTGGTAACCGTGTAATAACAGTTGATATTAACGGTGGAGGCCAGTTTCAGTCCGTCCAAGACGCCGTCAATGCTGTCCCGGACAACAATACAATGAATGTGCTTATTCAAATAAGTGCTGGATGCTACAAAGAGAAGGTGGAGGTTCCCGTGACTAAACCGTACATAACATTTCAAGGAGAGGGAAGGGATGTAACGGTTATAGAATGGCATGATAGAGCTTCTGATCCTGGTCCCAATGGACAACAGCTTCGTACTTATCGAACTGCTTCTGTTACTGTCTTGGCCAACTATTTCTCTGCTAAGAATATCACCTTCAAGAATACAGCTCCGGCGCCAAAGCCAGGGATGGAAGGATGGCAAGCGGTTGCGTTTCGCATATCAGGGGACAAAGCATACTTTTCCGGCTGTGGCTTCCACGGCGCACAAGACACACTTTGTGATGATGCTGGTAGGCATTATTTCAAGGAATGCTACATTGAGGGCTCCATTGATTTCATTTTTGGAAATGGCAGATCCATGTACAAGGATTGCGAGCTACATTCAATAGCCACGAGGTTTGGATCGATAGCAGCCCATGATAGGAATTACCCATATGAGAAGACAGGATTCGCATTCGTACGATGCAAAGTGACGGGTACAGGCCAACTATATGTGGGCCGTGCAATGGGCCAATACTCGAGAATAGTCTATGCATACACATACTTCGATAATATAGTTGCACCCGGTGGTTGGGATGATTGGGACCATGCCAACAACAAAAACAAGACTGTGTTCTTTGGAGTGTACAAGTGTTGGGGACCAGGAGCAGAGGCAGTACGTGGGGTATCATGGGCCCAAGAGTTGGATTTTAAATCTGCACATCCATTTATCAGGAAGAGCTTCGTCAATGGGAGACATTGGATCGCACCAACTGATGCTTAG 1101 0.4505 MQHSIMAKTTLFYLLHLLLIFTCMLLNAGIVTLGARHHHNATFNYLSSSNSSEHHWIGPVGNRVITVDINGGGQFQSVQDAVNAVPDNNTMNVLIQISAGCYKEKVEVPVTKPYITFQGEGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVLANYFSAKNITFKNTAPAPKPGMEGWQAVAFRISGDKAYFSGCGFHGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRNYPYEKTGFAFVRCKVTGTGQLYVGRAMGQYSRIVYAYTYFDNIVAPGGWDDWDHANNKNKTVFFGVYKCWGPGAEAVRGVSWAQELDFKSAHPFIRKSFVNGRHWIAPTDA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00521 366 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Trre9g00521 366 SUPERFAMILY Pectin lyase-like 61 364 IPR011050 -
Trre9g00521 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 60 362 - -
Trre9g00521 366 Pfam Pectinesterase 65 357 IPR000070 GO:0030599|GO:0042545
Trre9g00521 366 Gene3D - 61 366 IPR012334 -
Trre9g00521 366 FunFam Pectinesterase 60 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00521 Trre-Chr9 3749109 3752154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00521 15 366 Carbohydrate Esterase AT5G47500 71.831 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00521 - - cam:101501763 669.848