Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00507 ATGGCTTCTCCCCTGTTTCTACTCTGTTTCATACTCTGTTTTTCACTATCATCTCAAATGATTCTATTACCATTAACACACTCAATTTCCAAAACCCAATTCAACACTACTCACCACCTCCTCAAATCAACCTCAACCCGTTCCTTCAACCGCTTCCACCACCAACACCACCACAAAAAACGCCAAACCCAAGTTTCTCTCCCACTTTCACCAGGAAGTGATTACACACTTTCCTTCAACCTAGGTTCAAACCCATCACAACTCATAACTCTCTACATGGACACAGGTAGTGACCTTGTTTGGTTCCCTTGTTCACCTTTCGAATGTATCCTCTGTGAAGGAAAACCACAAACAACAAAACCAGTAAACATCACAAAAGAAACACACTCTGTTTCTTGTCAATCCCCTGCATGTTCTTCAGCACATTCAACCATGTCTTCTAGTAATCTTTGTGCTATTTCTCGTTGTCCTTTAGACTTCATTGAAACTTCTGATTGTTCTAATTTTTCTTGTCCTCCATTTTACTATGCTTATGGCGACGGAAGCTTCGTAGCTAATCTTTATCGTCACACACTTTCTCTTTCTTCTCTTCATCTTCAAAACTTCACTTTTGGTTGTGCTCATACTGCACTTGCTGAACCCACCGACGTCGCTGGTTTTGGCCGTGGAATTCTCTCTTTTCCGGCTCAGCTTTCTACTCTTTCACCTCATTTGGGAAACCGTTTTTCTTATTGTTTAGTATCTCATTCTTTCGACGGTGACCGAGTTCGTCGACCGAGTCCACTCATTCTCGGCCGCCATGACGATGACACCACCACCGCCGGAGAAGCTGTTGAATTTGTCTACACTTCAATGCTTGCAAACCCAAAGCACCCTTATTACTACTGTGTGGGGCTCGCCGGAATAACAGTCGGAAAGAAAACGCTACCGGCGCCGGAGATTCTTAAAAGGGTCGACGGTAAAGGTAACGGAGGGATGGTTGTTGATTCTGGAACAACGTTTACGATGTTGCCGGAGAGTTTTTATAACGCGGTGGTTACTGAGTTCGATAAACGAGTTAGACGAGTTAACAAACGAGCGAGTGATGTTGAAACTAAAACGGGTCTCGGGCCGTGTTATTACTTAAGCGGGTTATCACAAATACCAATGATGACGTTGCATTTTGTTGGGAATAATTCGGGTGTGGTGTTGCCTAGGAAGAATTACTTTTATGAATTTTTGGACGGTGGTGATGGTTCTAGAAAGAAAAGTAAAGTGGGGTGTATGATGCTGATGAACGGTGGAGATGAAACTGAGTTAGATGGTGGACCTGGAGCTACTCTAGGGAATTATCAACAACAAGGGTTTGAAGTTGTTTATGATTTGGAGAAAGAACGCGTGGGTTTCGCTAAAAAAGAGTGCGCGTTGCTTTGGGATAGTCTTAACAGTGTGAAAAACTAA 1440 0.4319 MASPLFLLCFILCFSLSSQMILLPLTHSISKTQFNTTHHLLKSTSTRSFNRFHHQHHHKKRQTQVSLPLSPGSDYTLSFNLGSNPSQLITLYMDTGSDLVWFPCSPFECILCEGKPQTTKPVNITKETHSVSCQSPACSSAHSTMSSSNLCAISRCPLDFIETSDCSNFSCPPFYYAYGDGSFVANLYRHTLSLSSLHLQNFTFGCAHTALAEPTDVAGFGRGILSFPAQLSTLSPHLGNRFSYCLVSHSFDGDRVRRPSPLILGRHDDDTTTAGEAVEFVYTSMLANPKHPYYYCVGLAGITVGKKTLPAPEILKRVDGKGNGGMVVDSGTTFTMLPESFYNAVVTEFDKRVRRVNKRASDVETKTGLGPCYYLSGLSQIPMMTLHFVGNNSGVVLPRKNYFYEFLDGGDGSRKKSKVGCMMLMNGGDETELDGGPGATLGNYQQQGFEVVYDLEKERVGFAKKECALLWDSLNSVKN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00507 479 Pfam Xylanase inhibitor C-terminal 295 463 IPR032799 -
Trre9g00507 479 Pfam Xylanase inhibitor N-terminal 75 249 IPR032861 -
Trre9g00507 479 SUPERFAMILY Acid proteases 70 472 IPR021109 -
Trre9g00507 479 PANTHER OS07G0603500 PROTEIN-RELATED 32 467 - -
Trre9g00507 479 CDD pepsin_A_like_plant 75 467 IPR034161 -
Trre9g00507 479 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 326 337 IPR001969 GO:0004190|GO:0006508
Trre9g00507 479 Gene3D Acid Proteases 271 470 IPR021109 -
Trre9g00507 479 FunFam Probable aspartyl protease At4g16563 65 264 - -
Trre9g00507 479 Gene3D Acid Proteases 57 265 IPR021109 -
Trre9g00507 479 ProSiteProfiles Peptidase family A1 domain profile. 75 463 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00507 Trre-Chr9 3666885 3668324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00507 57 470 Miscellaneous Gene Families AT1G77480 23.973 2.10e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00507 - - gmx:100807884 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00507 9 3666885 3668324 Trre9g00507 9 3666885 3668324 ECH
Trre9g00507 9 3666885 3668324 Trre15g03276 15 31682890 31683405 PCT