Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g00493 | ATGGATGTCAGAAGCAAATCCTTTACTGAAGAAGCACAGGTTCCACATTATCTTCAGTGTCCATTCAGCCGTGAGCTGTTTCGTGATCCGGTAATAGCTCCAAGTGGGGCATCATATGAAAGACGCGCTATCCTTGACTATATCCGGAAGGCTGCGCCGGGGAAGGCGATTGATCCGTCGACGAGGCTACCACTTCGAGAATGCCAGCTATATAATAATCTTGCTCTTAGGGAAGCTGTTGATGATTTCCTTCACAGAAACTGGTGGGCCTACAAAGTTGATGGTTTTCATGAAATTAATGATTGGACACTTTAG | 315 | 0.4571 | MDVRSKSFTEEAQVPHYLQCPFSRELFRDPVIAPSGASYERRAILDYIRKAAPGKAIDPSTRLPLRECQLYNNLALREAVDDFLHRNWWAYKVDGFHEINDWTL | 104 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g00493 | 104 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 92 | IPR013083 | - | |
Trre9g00493 | 104 | ProSiteProfiles | U-box domain profile. | 13 | 90 | IPR003613 | GO:0004842|GO:0016567 | |
Trre9g00493 | 104 | SMART | Ubox_2 | 17 | 83 | IPR003613 | GO:0004842|GO:0016567 | |
Trre9g00493 | 104 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 10 | 92 | IPR045200 | GO:0000209|GO:0061630 | |
Trre9g00493 | 104 | Pfam | U-box domain | 14 | 87 | IPR003613 | GO:0004842|GO:0016567 | |
Trre9g00493 | 104 | SUPERFAMILY | RING/U-box | 10 | 90 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g00493 | Trre-Chr9 | 3507203 | 3508956 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g00493 | 13 | 93 | U-box Gene Family | AT3G07370 | 49.383 | 1.12e-19 | 79.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g00493 | K09561 | - | rcu:8273681 | 88.1965 |