Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00493 ATGGATGTCAGAAGCAAATCCTTTACTGAAGAAGCACAGGTTCCACATTATCTTCAGTGTCCATTCAGCCGTGAGCTGTTTCGTGATCCGGTAATAGCTCCAAGTGGGGCATCATATGAAAGACGCGCTATCCTTGACTATATCCGGAAGGCTGCGCCGGGGAAGGCGATTGATCCGTCGACGAGGCTACCACTTCGAGAATGCCAGCTATATAATAATCTTGCTCTTAGGGAAGCTGTTGATGATTTCCTTCACAGAAACTGGTGGGCCTACAAAGTTGATGGTTTTCATGAAATTAATGATTGGACACTTTAG 315 0.4571 MDVRSKSFTEEAQVPHYLQCPFSRELFRDPVIAPSGASYERRAILDYIRKAAPGKAIDPSTRLPLRECQLYNNLALREAVDDFLHRNWWAYKVDGFHEINDWTL 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00493 104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Trre9g00493 104 ProSiteProfiles U-box domain profile. 13 90 IPR003613 GO:0004842|GO:0016567
Trre9g00493 104 SMART Ubox_2 17 83 IPR003613 GO:0004842|GO:0016567
Trre9g00493 104 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 10 92 IPR045200 GO:0000209|GO:0061630
Trre9g00493 104 Pfam U-box domain 14 87 IPR003613 GO:0004842|GO:0016567
Trre9g00493 104 SUPERFAMILY RING/U-box 10 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00493 Trre-Chr9 3507203 3508956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00493 13 93 U-box Gene Family AT3G07370 49.383 1.12e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00493 K09561 - rcu:8273681 88.1965