Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre9g00492 | ATGGCGAGTTCGACGGCGGCGTCATCTTCGTCGACGGCGGCGTCATCTTCATCGTCGACGGCGGCGTCATACTACCTGAAAGGAGAAGAGCTCTACAACAACAAACACTACCAACAAGCGGAGATCGCATTCAGCAATGCGATTAAGCTGTCTCCTGATATGCATGAAGCATATTATTTCCGTGGAATTTGCAGATTTAATTTGTTCCACTTGGAAATTGCTGCACCAGACCTTCGACATGCTGTCGAGTTTGGAGTTAAAAATTACAAGAAACATCATGCATTTGGAATTGTGCTCCAACGCTTAGGAAACCTTGAGGAAGCGATTACTCAATTTGAAAAGGCTTATGATATTGTCAGATTCGACAATTCCACCACTGATTTGGTGGAAGGCTGTTGGAATATATTTGCTTACAGTAAATACTCTCTGTGGCAAAATTCTCTTGAACTTCAACAAAAGGAAGTCGATCGCTTAATGCAAGAGTTGGAGGAAGCAAATAATCCTGGCTTGGCTTTGGTGAAACTCTGTTTGTATTCTTTGTACTCTTTGTTTTTGGCATCGCTGGTTCCACATTATCTTCAGTGTCCAATCAGCCGTGAGCTGTTTCGTGATCCGGTAATAGCTCCAAGTGGGGCATCATATGAAAGACGCGCTATCCTTGACTATATCCGGAAGGCTGCGCCGGGGAAGGCGATTGATCCGTCGACGAGGCTACCACTTCGAGAATGCCAGCTATATAGTAATCTTGCTCTTAGGGAAGCAGTTGATGATTTCCTTCACAGAAACTGGTGGGCCTACAAAGTTCCACATTATCTTCAGTGTCCAATTAGCCGTGAGCTGTTTCGTGATCCGGTAATAGCTCCAAGTGGGGCATCATATGAAAGACGCGCTATCCTTGACTATATCCGGAAGGCTGCGCCGGGGAAGGCGATTGATCCGTCGACGAGGCTACCACTTCGAGAATGCCAGCTATATAATAATCTTGCTCTTAGGGAAGCTGTTGATGATTTCCTTCACAAAAACTGGTGGGCCTACAACGTTGATGGTTTTCATGAAATTAATGATTGGACACTTTATTACATTAGCCCAGTGGCAATAGCATGTGTGTGCAAGGCAAAGGTTGTCAGTTCAACTCCTAGGTGTGCCTGTTTTATATTTTTTCCATTGTGTTTTATATAG | 1179 | 0.4453 | MASSTAASSSSTAASSSSSTAASYYLKGEELYNNKHYQQAEIAFSNAIKLSPDMHEAYYFRGICRFNLFHLEIAAPDLRHAVEFGVKNYKKHHAFGIVLQRLGNLEEAITQFEKAYDIVRFDNSTTDLVEGCWNIFAYSKYSLWQNSLELQQKEVDRLMQELEEANNPGLALVKLCLYSLYSLFLASLVPHYLQCPISRELFRDPVIAPSGASYERRAILDYIRKAAPGKAIDPSTRLPLRECQLYSNLALREAVDDFLHRNWWAYKVPHYLQCPISRELFRDPVIAPSGASYERRAILDYIRKAAPGKAIDPSTRLPLRECQLYNNLALREAVDDFLHKNWWAYNVDGFHEINDWTLYYISPVAIACVCKAKVVSSTPRCACFIFFPLCFI | 392 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre9g00492 | 392 | SUPERFAMILY | RING/U-box | 189 | 265 | - | - | |
| Trre9g00492 | 392 | SMART | Ubox_2 | 192 | 258 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre9g00492 | 392 | SMART | Ubox_2 | 271 | 337 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre9g00492 | 392 | SUPERFAMILY | TPR-like | 17 | 119 | IPR011990 | GO:0005515 | |
| Trre9g00492 | 392 | ProSiteProfiles | U-box domain profile. | 188 | 265 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre9g00492 | 392 | Gene3D | Tetratricopeptide repeat domain | 5 | 131 | IPR011990 | GO:0005515 | |
| Trre9g00492 | 392 | Pfam | U-box domain | 268 | 341 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre9g00492 | 392 | Pfam | U-box domain | 189 | 262 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre9g00492 | 392 | ProSiteProfiles | U-box domain profile. | 267 | 344 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre9g00492 | 392 | SMART | tpr_5 | 21 | 54 | IPR019734 | GO:0005515 | |
| Trre9g00492 | 392 | SMART | tpr_5 | 55 | 88 | IPR019734 | GO:0005515 | |
| Trre9g00492 | 392 | SMART | tpr_5 | 89 | 122 | IPR019734 | GO:0005515 | |
| Trre9g00492 | 392 | Pfam | Tetratricopeptide repeat | 96 | 118 | IPR019734 | GO:0005515 | |
| Trre9g00492 | 392 | Pfam | Tetratricopeptide repeat | 21 | 53 | IPR019734 | GO:0005515 | |
| Trre9g00492 | 392 | ProSiteProfiles | TPR repeat profile. | 21 | 54 | IPR019734 | GO:0005515 | |
| Trre9g00492 | 392 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 268 | 346 | IPR045200 | GO:0000209|GO:0061630 | |
| Trre9g00492 | 392 | SUPERFAMILY | RING/U-box | 266 | 344 | - | - | |
| Trre9g00492 | 392 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 268 | 347 | IPR013083 | - | |
| Trre9g00492 | 392 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 267 | IPR013083 | - | |
| Trre9g00492 | 392 | Coils | Coil | 141 | 168 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre9g00492 | Trre-Chr9 | 3506477 | 3515233 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre9g00492 | 267 | 347 | U-box Gene Family | AT3G07370 | 50.617 | 4.09e-17 | 79.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre9g00492 | K09561 | - | rcu:8273681 | 126.716 |