Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00485 ATGAACAATTTCTCACACGTTCCTCCTGGATTTCGCTTCCATCCCACCGATGAAGAGCTCGTTGATCACTACCTTAGAAAAAAGATAGCTTCCAAAAGAATTGATCTTGATATCATTAAAGATGTTGATCTCTATAAAATTGAACCATGGGACTTACAAGAATTATGCAAAATAGGAAGTGATGAACAAACAGAATGGTATTTCTTCAGTCATAAAGATAAGAAATATCCAACTAGCAGCCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAAGCAATTTACTCTAACCATATTTCTTTGATTGGAATGAGAAAGACTCTAGTTTTCTACAAAGGAAGAGCACCTAATGGACAAAAATCTGATTGGATTATGCATGAATATCGTTTAGAAACTAATGAAAATGGAACTACTCCTCAAGAAGAAGGATGGGCTGTGTGTAAAGTGTTCAAGAAAAGAATAGCTTCAACAATGATGAGGAGAATGGATGATTCACCATGTGGATATGATGATCAAGTATCATTCATGCAATCAGAGTTTGAATCTTCCCCAAATAGAATTTCTCATGCATCATACCAACAACATTACCCTTGCAAACAAGAATACTATGATAGATTTCAATACAATATAGCCATTAATGATGCTAATAATTTCCTTCAACAACTTCCACAACTAGAAAGCCCTAAAGTTCCTAATAATTTTCATTGTTCATCATCATCATCACATTCACTCACTACTCATCAAGAACAACAATATTATAGCCAGCAACAAAATATGCAAATGCTTTATGGTGGTGGAAATAGCAATAATGATAATCAAGCTGCAGGATTAGTGGAGCAATCAAGGGATTGGAGAGTACTTGATAAATTTGTTGCTTCTCAGCTAAGTCATGATCAAGATGCTTCTAAGGAAAGTACTAGTTATTGCAATGTGGATGAACAAATTGCTTTGCTAGCAAGTGATGAGTCAAAAAAATCTCAAACTAGTCAGATTGACATGTGGAAGTGA 1026 0.3509 MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNHISLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWAVCKVFKKRIASTMMRRMDDSPCGYDDQVSFMQSEFESSPNRISHASYQQHYPCKQEYYDRFQYNIAINDANNFLQQLPQLESPKVPNNFHCSSSSSHSLTTHQEQQYYSQQQNMQMLYGGGNSNNDNQAAGLVEQSRDWRVLDKFVASQLSHDQDASKESTSYCNVDEQIALLASDESKKSQTSQIDMWK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00485 341 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Trre9g00485 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 275 - -
Trre9g00485 341 MobiDBLite consensus disorder prediction 238 257 - -
Trre9g00485 341 Pfam No apical meristem (NAM) protein 8 136 IPR003441 GO:0003677|GO:0006355
Trre9g00485 341 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Trre9g00485 341 FunFam NAC domain-containing protein 16 162 - -
Trre9g00485 341 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00485 Trre-Chr9 3478721 3480776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00485 1 341 NAC Transcription Factor Family AT1G12260 56.593 1.19e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g00485 NAM 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00485 - - zju:107405051 417.157