Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00481 ATGGCCGACGAAGCCAAAGCCAAAGGTAACGCCGCATTCTCTTCCGGTGACTTCGAAACCGCAATTCGTCACTTCTCTGAAGCCATCGATCTTTCCCCTAACAACCATGTTCTATATTCCAACCGATCCGCAGCTTACGCTTCTCTTCAGAAATATTCCGATGCTTTAACCGACGCTAAGAAAACCGTTGAACTCAAACCTGATTGGTCAAAAGGTTATAGTCGTCTCGGCGCGGCTCATCTTGGTTTATCTCAATTTGACGACGCCGTTTCTGCTTATACAAAAGGTCTTGAAATTGATCCTAATAATGAACCTTTGAAATCAGGTTTAGCCGATGCAAAGAAAGCTAGGTCACGCTCTGCGCCGCCGTCGGCTAATCCTTTTGGTGATGCTTTTTCTGGTCCTGAGATGTGGGCTAAGCTTACGGCTGATCCTACAACTAGGGTTTATCTTCAACAACCTGATTTTGTGAAGATGATGCAAGATATTCAAAAGGATCCAAATAATCTCAATTTGTATTTGAAGGATCAAAGAGTTATGCAAGCTTTTGGAGTTTTGCTTAATGTTAAGATTCGTAGTCCTGGTGATGATGTTGATATGCCGGACATTCCTTCGCCGTCTTCTTCCTCGTCTGAGAGGAAGAGAGCAGCTGAAGCTGAGCCACCTAAGCAGCCTGAGCCGGAACCCGAACCAGAACCAATGGAAGAAGTGGCTGATGAGGAAAAGGAGAAAAAGCAGAGGAAGGCTGAGGCACAGAAAGAAAAGGAAGCTGGTAATGCAGCGTATAAGAAGAAGGATTTCGATACCGCGATTCAACATTACTCAAAAGCTTTGGAATTGGATGATGAGGATGTTTCCTTTCTCACCAACCGTGCTGCTGTATACTTGGAGATGGGAAAGTATGAGGATTGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGAAGAGAACTACGATCAGATTACAAGATGATAGCAAGAGCTTTGACAAGGAAGGGAAATGCCATGTGCAAAACGGCAAAATGTTCTAAAGATTATGAACCCATCATTGAGACTTATCAAAAAGCACTTACAGAGCACCGCAACCCGGACACCCTGAAGAAACTTAATGAAGCTGAAAAGGCTAAGAAAGAACTTGAACAACAAGAATACTATGATCCAAAGTTGGCCAATGAGGAGAGAGAAAAAGGAAATGATTACTTCAAGCAGCAGAAGTATCCTGAAGCTATTAAGCATTACACCGAGTCTCTAAAAAGAAACCCAAAAGATCCTAAGGCTTATAGTAACAGAGCTGCATGTTACACCAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAATGCATTGAGCTTGATCCAACCTTCACCAAGGGTTATACCCGTAAAGGTGCTGTTCAGTATTTCATGAAAGAATATGAAAAGGCCTTGGAAACATACAGGGAGGGGTTGAAACATGACCCCAACAACCAGGAGTTGCTTGATGGCATTTCAAAGTGCGTACAACAAATTAACAGAACCAGCCGCGGAGATGTAACTCCTGAAGAGTTGAAGGAGAGACAGGCCAAGGCAATGTCAGATCCAGAGATACAGAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAAGAAAATCCTAAGGCTGCACAGGAACATACCAAGAACCCTGGTGTGATGGAAAAGATCCAAAAGCTTATAAGTGCTGGAATTGTCCAGATGAAGTAA 1740 0.4328 MADEAKAKGNAAFSSGDFETAIRHFSEAIDLSPNNHVLYSNRSAAYASLQKYSDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQFDDAVSAYTKGLEIDPNNEPLKSGLADAKKARSRSAPPSANPFGDAFSGPEMWAKLTADPTTRVYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKIRSPGDDVDMPDIPSPSSSSSERKRAAEAEPPKQPEPEPEPEPMEEVADEEKEKKQRKAEAQKEKEAGNAAYKKKDFDTAIQHYSKALELDDEDVSFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDYKMIARALTRKGNAMCKTAKCSKDYEPIIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYYDPKLANEEREKGNDYFKQQKYPEAIKHYTESLKRNPKDPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQYFMKEYEKALETYREGLKHDPNNQELLDGISKCVQQINRTSRGDVTPEELKERQAKAMSDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMEKIQKLISAGIVQMK 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00481 579 Gene3D Tetratricopeptide repeat domain 248 384 IPR011990 GO:0005515
Trre9g00481 579 ProSiteProfiles TPR repeat profile. 251 284 IPR019734 GO:0005515
Trre9g00481 579 Coils Coil 362 382 - -
Trre9g00481 579 Gene3D - 125 191 - -
Trre9g00481 579 SUPERFAMILY TPR-like 9 504 IPR011990 GO:0005515
Trre9g00481 579 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Trre9g00481 579 Pfam Tetratricopeptide repeat 459 491 IPR001440 GO:0005515
Trre9g00481 579 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Trre9g00481 579 ProSiteProfiles TPR repeat profile. 458 491 IPR019734 GO:0005515
Trre9g00481 579 Gene3D Tetratricopeptide repeat domain 389 508 IPR011990 GO:0005515
Trre9g00481 579 SMART CBM 528 567 IPR006636 -
Trre9g00481 579 SMART CBM 134 173 IPR006636 -
Trre9g00481 579 Pfam STI1 domain 520 571 IPR041243 -
Trre9g00481 579 Pfam STI1 domain 135 188 IPR041243 -
Trre9g00481 579 ProSiteProfiles TPR repeat profile. 424 457 IPR019734 GO:0005515
Trre9g00481 579 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 511 579 - -
Trre9g00481 579 FunFam Putative stress-induced-phosphoprotein 1 124 192 - -
Trre9g00481 579 MobiDBLite consensus disorder prediction 193 260 - -
Trre9g00481 579 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Trre9g00481 579 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Trre9g00481 579 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Trre9g00481 579 FunFam Stress-induced phosphoprotein 1 1 116 - -
Trre9g00481 579 MobiDBLite consensus disorder prediction 238 260 - -
Trre9g00481 579 Gene3D - 509 579 - -
Trre9g00481 579 SMART tpr_5 70 103 IPR019734 GO:0005515
Trre9g00481 579 SMART tpr_5 285 318 IPR019734 GO:0005515
Trre9g00481 579 SMART tpr_5 390 423 IPR019734 GO:0005515
Trre9g00481 579 SMART tpr_5 424 457 IPR019734 GO:0005515
Trre9g00481 579 SMART tpr_5 2 35 IPR019734 GO:0005515
Trre9g00481 579 SMART tpr_5 458 491 IPR019734 GO:0005515
Trre9g00481 579 SMART tpr_5 251 284 IPR019734 GO:0005515
Trre9g00481 579 SMART tpr_5 36 69 IPR019734 GO:0005515
Trre9g00481 579 ProSiteProfiles TPR repeat profile. 390 423 IPR019734 GO:0005515
Trre9g00481 579 MobiDBLite consensus disorder prediction 213 230 - -
Trre9g00481 579 FunFam hsp70-Hsp90 organizing protein 3-like 389 503 - -
Trre9g00481 579 Pfam TPR repeat 397 438 - -
Trre9g00481 579 Pfam TPR repeat 258 299 - -
Trre9g00481 579 Pfam TPR repeat 9 49 - -
Trre9g00481 579 PANTHER TPR REPEAT CONTAINING PROTEIN 2 551 - -
Trre9g00481 579 Coils Coil 234 257 - -
Trre9g00481 579 FunFam Stress-induced phosphoprotein 1 248 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00481 Trre-Chr9 3461019 3464447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00481 389 485 U-box Gene Family AT3G07370 27.835 1.74e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00481 K09553 - gmx:100816776 922.539