Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00480 ATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTTCAAAACAAGATCTTGAACTAACAAGATCTTCATTGACACATTTGGAAACTGATATGAATCTGTTCTTAGAAGAAGCAGAGAAAGTAAGAACAGAAATGGGTGAAATTCGCGATATATTAACGAAGCTTGAAAAATCAAATGAAGAGAGCAAGTCACTTCATAAAACTGAAGCTTTGAAATCATTGAGGGAAAGGATTAATACTGATATTGTAACTGTATTAAAGAAAGCAAAATCTATTAGGACTCAATTAGAAGAAATGGATCGCGCTAATGACGCTAATCGAAGACTTTCTGGTCTTAAAGATGGTTCACCTGCAATTTATAGAACTAGAATTGCTGTTACTAATGGTTTGCGTAAGAAGCTTAAGGAGCTTATGATGGAGTTTCAGGAACTGAGGCAGAAAATGATGAGTGAATACAAAGAAACAGTAGGAAGAAGATATTATACAGTGACAGGAGAACATGCTGATGAAGAGGTAATCGATAAGATAATATCGAATGGCGATGATGAAAGTTTTTTAGGAAAGGCAATACAAGAACATGGGAGAGGAAAAGTTTTAGAAACTGTGGTTGAGATTCAAGATAGACATGATGCAGCAAAAGAGATTGAGAAGAGTTTGTTGGAACTTCATCAAGTTTTTTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAAAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAAGATGGAACAAAGGATCTTCACAGTGCTAAACAGTATCAGAAAAGTGGAAGGAAGTGGATGTGCATTGGGATTATACTTTTGCTGATTATAATTCTCATCATTGTTATTCCAATTGTTACTAGTTTCAGTAGTTCTTGA 900 0.3456 MKDEVDLEAGLSKQDLELTRSSLTHLETDMNLFLEEAEKVRTEMGEIRDILTKLEKSNEESKSLHKTEALKSLRERINTDIVTVLKKAKSIRTQLEEMDRANDANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQELRQKMMSEYKETVGRRYYTVTGEHADEEVIDKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKDLHSAKQYQKSGRKWMCIGIILLLIIILIIVIPIVTSFSSS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00480 299 SUPERFAMILY t-snare proteins 28 256 IPR010989 GO:0016020|GO:0016192
Trre9g00480 299 CDD SNARE_syntaxin1-like 200 260 - -
Trre9g00480 299 ProSitePatterns Syntaxin / epimorphin family signature. 207 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre9g00480 299 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Trre9g00480 299 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Trre9g00480 299 SMART tSNARE_6 196 263 IPR000727 -
Trre9g00480 299 Gene3D - 197 296 - -
Trre9g00480 299 FunFam Syntaxin 132 194 294 - -
Trre9g00480 299 SMART SynN_4 25 152 IPR006011 GO:0016020
Trre9g00480 299 Gene3D - 30 158 - -
Trre9g00480 299 PANTHER SYNTAXIN 41 286 IPR045242 -
Trre9g00480 299 Coils Coil 126 153 - -
Trre9g00480 299 CDD SynN 33 177 IPR006011 GO:0016020
Trre9g00480 299 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 27 158 - -
Trre9g00480 299 Pfam SNARE domain 238 289 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00480 Trre-Chr9 3456264 3457328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00480 6 299 SNARE and Associated Proteins AT1G08560 65.763 2.21e-122 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00480 K08486 - gmx:100816016 460.299