Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00479 ATGAATGATTTAATGACAAAATCATTCACCAACTATGTTGATCTGAAAAAACTAGCTATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTTCAAAACAAGATCTTGAACTAACAAGATCTTCATTGACACATTTGGAAACTGATATGAATCTGTTCTTAGAAGAAGCAGAGAAAGTAAGAACAGAAATGGGTGAAATTCGCGATATATTAACGAAGCTTGAAAAATCAAATGAAGAGAGCAAGTCACTTCATAAAACTGAAGCTTTGAAATCATTGAGGGAAAGGATTAATACTGATATTGTAACTGTATTAAAGAAAGCAAAATCTATTAGGACTCAATTAGAAGAAATGGATCGCGCTAATGACGCTAATCGAAGACTTTCTGGTCTTAAAGATGGTTCACCTGCAATTTATAGAACTAGAATTGCTGTTACTAATGGTTTGCGTAAGAAGCTTAAGGAGCTTATGATGGAGTTTCAGGAACTGAGGCAGAAAATGATGAGTGAATACAAAGAAACAGTAGGAAGAAGATATTATACAGTGACAGGAGAACATGCTGATGAAGAGGTAATCGATAAGATAATATCGAATGGCGATGATGAAAGTTTTTTAGGAAAGGCAATACAAGAACATGGGAGAGGAAAAGTTTTAGAAACTGTGGTTGAGATTCAAGATAGACATGATGCAGCAAAAGAGATTGAGAAGAGTTTGTTGGAACTTCATCAAGTTTTTTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAAAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAAGATGGAACAAAGGATCTTCACAGTGCTAAACAGTATCAGAAAAGTGGAAGGAAGTGGATGTGCATTGGGATTATACTTTTGCTGATTATAATTCTCATCATTGTTATTCCAATTGTTACTAGTTTCAGTAGTTCTTGA 957 0.3417 MNDLMTKSFTNYVDLKKLAMKDEVDLEAGLSKQDLELTRSSLTHLETDMNLFLEEAEKVRTEMGEIRDILTKLEKSNEESKSLHKTEALKSLRERINTDIVTVLKKAKSIRTQLEEMDRANDANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQELRQKMMSEYKETVGRRYYTVTGEHADEEVIDKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKDLHSAKQYQKSGRKWMCIGIILLLIIILIIVIPIVTSFSSS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00479 318 SMART SynN_4 44 171 IPR006011 GO:0016020
Trre9g00479 318 SUPERFAMILY t-snare proteins 47 275 IPR010989 GO:0016020|GO:0016192
Trre9g00479 318 Gene3D - 216 315 - -
Trre9g00479 318 Pfam SNARE domain 257 308 IPR000727 -
Trre9g00479 318 SMART tSNARE_6 215 282 IPR000727 -
Trre9g00479 318 CDD SNARE_syntaxin1-like 219 279 - -
Trre9g00479 318 FunFam Syntaxin 132 213 313 - -
Trre9g00479 318 ProSitePatterns Syntaxin / epimorphin family signature. 226 266 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre9g00479 318 Gene3D - 49 177 - -
Trre9g00479 318 PANTHER SYNTAXIN 60 305 IPR045242 -
Trre9g00479 318 CDD SynN 52 196 IPR006011 GO:0016020
Trre9g00479 318 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 46 177 - -
Trre9g00479 318 Pfam Syntaxin 52 255 IPR006011 GO:0016020
Trre9g00479 318 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 220 282 IPR000727 -
Trre9g00479 318 Coils Coil 145 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00479 Trre-Chr9 3456264 3457385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00479 1 318 SNARE and Associated Proteins AT1G08560 66.458 3.27e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00479 K08486 - gmx:100816016 493.426